View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_1D_low_27 (Length: 225)
Name: NF1268_1D_low_27
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_1D_low_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 1048233 - 1048012
Alignment:
| Q |
8 |
gacatcacgtttttgaaggaatagaatctcgaggtggaatccgttgatgaaatgagaaccagcgacgtcttaagaggccaaaacgtagtacaaaaactca |
107 |
Q |
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| T |
1048233 |
gacatgacgtttttgaaggaatagaatctcgaggtggaatccgttgatgaaatgagaaccagcggcgtctcaagatgccataacgtagtacaaaaactca |
1048134 |
T |
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| Q |
108 |
ttaaaacaaataatagattg----aatggtatcaagtttgatggtgaagtggatattgggaacagaaagagatgttatttgtcgataatggtatcaaact |
203 |
Q |
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| T |
1048133 |
ttaaaacaaataatagattgaatgaatggtatcaagtttgatggtgaagtggatattgggaacagaaagagatgttatttgtcgataatggtatcaaact |
1048034 |
T |
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| Q |
204 |
tagaatagattgaataaggctg |
225 |
Q |
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| T |
1048033 |
tagaatagattgaataaggctg |
1048012 |
T |
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