View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_1D_low_3 (Length: 647)
Name: NF1268_1D_low_3
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_1D_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 5 - 624
Target Start/End: Original strand, 37216289 - 37216908
Alignment:
| Q |
5 |
tgaatcataaacgactttcaacattttccctctacttctctttaatgttttaaacataacttttatatccctactcgagagtcgcattattttccgtaga |
104 |
Q |
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| T |
37216289 |
tgaatcataaacgactttcaacatgttccctctacttctctttaatgttttaaacataacttttatatccttactcgagagtcgcattattttccgtaga |
37216388 |
T |
|
| Q |
105 |
ccattgaatggaattttctcgtgcctaccatgatccttcttggttgtacaaacaccactggactctccttgactacctttcatcgttactgaaccccatt |
204 |
Q |
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| T |
37216389 |
ccattgagtggagttttctcgtgcctaccatgatccttcttggttgtacaaacaccaccggactctccttgactacctttcatcgttactgaaccccatt |
37216488 |
T |
|
| Q |
205 |
aagtctcctttgcacaacagaagaaaaaacaatacatgcacttccaacattgggatcttgcagacactcctaactcaaccatccaccaacactagagatg |
304 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
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| T |
37216489 |
aagtctcctttgcacagcagaagaaaaaacaatacacacacttccaacattgggatcttgcagacgctcctaactcaaccatctaccaacactagggatg |
37216588 |
T |
|
| Q |
305 |
tgtcatttcggcggacaagagagtaagcattgtcccaaacgacatgaaagaatccctgccaaactcttcgcaaaatgcccagtaaactaatcaacactaa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37216589 |
tgtcatttcggcggacaagagagtaagcattgtcccaaacgacatgaaagaatccttgccaaactctttgcaaaatgcccagtaaactaatcaacactaa |
37216688 |
T |
|
| Q |
405 |
cctctttctcaacattgttatcctggtcttaccgaaaattctgcgctttcacccacccattatttatctagtctccccttagccttagtacatttcataa |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37216689 |
cctctttctcaacattgttatcctggtcttaccgaaaattccgcgctttcacccacccattatttatctagtctccccctagccttagtacatttcataa |
37216788 |
T |
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| Q |
505 |
cctttttaataacggtgctcgtagctggcttaatagctacccaccctataactccaacactttatttaacgttgtagaatccgaatttctcctaactcga |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37216789 |
cctttttaataacggtgctcgtagctggcttaatagctactcaccctataactccaacactttatttaacgttgtagaatccgaatttctcttaactcga |
37216888 |
T |
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| Q |
605 |
tcattatcttcacaattaag |
624 |
Q |
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| T |
37216889 |
tcattatcttcacaattaag |
37216908 |
T |
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