View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_1D_low_30 (Length: 220)
Name: NF1268_1D_low_30
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_1D_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 25222704 - 25222508
Alignment:
| Q |
1 |
gggcatggtagtgcaccttagtgagatcctatactacccctcagtcacatagtactagtcttaagaagggtcaacaacctgagacacatccgcatgtgag |
100 |
Q |
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| T |
25222704 |
gggcatggtagtgcgccttagtgagatcctgtactactcctcagtcacatagtactagtcttaagaagggtcaacaacctgagacacatccgcatgtgag |
25222605 |
T |
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| Q |
101 |
gtcccctccaaatcatgcctacaaccacgtcccctattaggcattagattcaccaccactctatccttacgttcgctatcggacatggtgtcttttt |
197 |
Q |
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| T |
25222604 |
gtcccctccaaatcatgcctacaaccacgtcccctattaggcattagattcaccaccactctatccttacgtgcgctatcggtcatggtatcttttt |
25222508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 8351639 - 8351783
Alignment:
| Q |
43 |
agtcacatagtactagtcttaagaagggtcaacaacctgagacacatccgcatgtgaggtcccctccaaatcatgcctacaaccacgtcccctattaggc |
142 |
Q |
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||||||||||||||||||| |||| |||| ||||||||| ||| |||||| |||| | |||||||||||||||||||||||||||||||| | |||| |
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| T |
8351639 |
agtcacatagtactagtct-aagatgggttaacaacctgggacgcatccgtctgtgggttcccctccaaatcatgcctacaaccacgtcccatgatagga |
8351737 |
T |
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| Q |
143 |
attagattcaccaccactctatccttacgttcgctatcggacatgg |
188 |
Q |
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||||| ||| || ||||||||||||| ||| ||||||||| ||||| |
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| T |
8351738 |
attaggttcgccgccactctatccttgcgtgcgctatcggtcatgg |
8351783 |
T |
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