View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_1D_low_32 (Length: 205)
Name: NF1268_1D_low_32
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_1D_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 10152983 - 10152792
Alignment:
| Q |
7 |
ctgaaatgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaag |
106 |
Q |
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| T |
10152983 |
ctgatatgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaag |
10152884 |
T |
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| Q |
107 |
tgctgttaatcctctctatgaagctttaggcctttatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
198 |
Q |
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| T |
10152883 |
tgctgtcaatcctctctatgaagctttaggcctctatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
10152792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 10141341 - 10141171
Alignment:
| Q |
28 |
aagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaagtgctgttaatcctctctatga |
127 |
Q |
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| T |
10141341 |
aagctcttcatgaccttcctatagatataaagaaaaacaacaaagatgccattcctggaagtggttaccttgcaccaagtgcttttaaccctctcttaca |
10141242 |
T |
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| Q |
128 |
agctttaggcctttatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
198 |
Q |
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| T |
10141241 |
atctttcggcctctatgatatgggttcttcacaagccatgcatgatttctgctctcaactgaatgctacac |
10141171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 10146374 - 10146183
Alignment:
| Q |
7 |
ctgaaatgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaag |
106 |
Q |
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| T |
10146374 |
ctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaagaaaaacaacaaagatgtcatttctggaaggggttactttgcaccaag |
10146275 |
T |
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| Q |
107 |
tgctgttaatcctctctatgaagctttaggcctttatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
198 |
Q |
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| T |
10146274 |
tgctttaaacccactattagaatctttcggcctctatgacatggatgcttcataagctatgcatgatttctgctctcaactgaatgtcacac |
10146183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 10089721 - 10089535
Alignment:
| Q |
12 |
atgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaagtgctg |
111 |
Q |
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| T |
10089721 |
atgaaaatggttgttgtagctcttcacgaccttcctatggatatcaagaaaaacaataaagatgtcattcctggaagtggttactttggaccaagtgttt |
10089622 |
T |
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| Q |
112 |
ttaatcctctctatgaagctttaggcctttatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
198 |
Q |
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| T |
10089621 |
ttaaccctctcatagaatctgtcggcctctatgatatgggttcttcgcaagctatacaagatttctgctctcaattgaatgctacac |
10089535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 11301021 - 11301207
Alignment:
| Q |
12 |
atgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaagtgctg |
111 |
Q |
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| T |
11301021 |
atgaaaatagttgttatagctcttcatgaccttcctatggataggaagaaaaacaataaagatgtcattcctggaagtggttactttggaccaactgttt |
11301120 |
T |
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| Q |
112 |
ttaatcctctctatgaagctttaggcctttatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
198 |
Q |
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| T |
11301121 |
ttaaccctgtcatagaatctcttggcctctatgatatgggttcttcacaagctatacaatatttctgctctcaattgaatgctacac |
11301207 |
T |
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