View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_1D_low_5 (Length: 514)
Name: NF1268_1D_low_5
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_1D_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 25708120 - 25708571
Alignment:
| Q |
12 |
atgaagaaaatagcttcttccataaaggtggtggattaggagaatccaaaacccacttagacctttctatttgactagtactatcttcaatatgaaggac |
111 |
Q |
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| T |
25708120 |
atgaagaaaatagcttcttccataaaggtggtggattaggagaatccaaaacccacttagacctttctatttgactagtactatcttcaatatgaaggac |
25708219 |
T |
|
| Q |
112 |
tctttgatctctcatagttgaagtgtttgggtgaactctcttgtcacactagtacttaatattgtacaataactttatgatcggttaataaataccacta |
211 |
Q |
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| T |
25708220 |
tctttgatctctcatagttgaagtgtttgggtgaactctcttgtcacactagtacttaatattgtacaataactttatgatcggttaataaataccacta |
25708319 |
T |
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| Q |
212 |
acatcattcaatttgcattgggatcaatttatgtgtatgattgattaattggggtggtggcagaaagagggctctaaattctaaatagaaaagtgtgtat |
311 |
Q |
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| T |
25708320 |
acatcattcaatttgcattgggatcaatttatgtgtatgattgattaattggggtggtggcagaaagagggctctaaattctaaatagaaaagtgtgtat |
25708419 |
T |
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| Q |
312 |
gctatttgaggggtggttatgttaccacattcattggttagtgtcaaaagttgataccataataagatggtatatgaacacgttaacacccctttaatat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25708420 |
gctatttgaggggtggttatgttaccacattcattggttagtgtcaaaagttgataccataataagatggtatatgaacacgttaacacccctttaatat |
25708519 |
T |
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| Q |
412 |
gattccactgggaagcatatattctggacagggaaaaattggctttttatgt |
463 |
Q |
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| T |
25708520 |
gattccactgggaagcatatattctggacagggaaaaattggctttttatgt |
25708571 |
T |
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