View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_1D_low_6 (Length: 448)
Name: NF1268_1D_low_6
Description: NF1268_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_1D_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 3 - 397
Target Start/End: Original strand, 14088928 - 14089340
Alignment:
| Q |
3 |
tatacccttatgtacccgtattttttacccgtttgacccgcggatccacattaacccacacaactcggnnnnnnn------cgggttgggtcgggccatg |
96 |
Q |
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| T |
14088928 |
tatacccttatgtactcgtattttttacccgtttgacctgcgaacccgtattaacccacacagctcgtttttttttttttccgggttgggttgggccacg |
14089027 |
T |
|
| Q |
97 |
ggtccttgtccagccctagatttagtggtaaaaagaaaggctttggatctagaggtttagaattcgagtctcgctagtgtccttaaaggaaactaaatgt |
196 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
14089028 |
ggtccttgtccagccctagatttggtggtaaaaagaaaggctttggatctagaggtttagaattcgagtctggctagtgtccttaaaggaagctaaatgt |
14089127 |
T |
|
| Q |
197 |
aaatatctatgtaattgctctttaaaccctaagatcttatctttcttggaccggaacaccatccaacaaccctagtttttaacttatnnnnnnnctgcct |
296 |
Q |
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| T |
14089128 |
aaatatctatgtaattgttctttaaaccttaagatcttatctttcttggaccggaacaccatccaacaaccctaatttttaacttataaaaaaactgcct |
14089227 |
T |
|
| Q |
297 |
aataaccttgcctaggcatgtcatttaacgcac------------aacaataatgaatcgtttcgtgggactccaacatatgagagaatgtttgtgccag |
384 |
Q |
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| T |
14089228 |
aataaccttgcctaggcatgtcatttaactcacaacatatgagtgaacaataatgaatcgtttcgtgggactccaacatatgagagaatgtttgtgccag |
14089327 |
T |
|
| Q |
385 |
tcatacacaatat |
397 |
Q |
| |
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||||||||||||| |
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| T |
14089328 |
tcatacacaatat |
14089340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 39290085 - 39290142
Alignment:
| Q |
4 |
atacccttatgtacccgtattttttacccgtttgacccgcggatccacattaacccac |
61 |
Q |
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|||||||| ||||||||||||| | |||||||||||||||||| || |||||||||| |
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| T |
39290085 |
atacccttgtgtacccgtatttgtgacccgtttgacccgcggacccgaattaacccac |
39290142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 39383251 - 39383194
Alignment:
| Q |
4 |
atacccttatgtacccgtattttttacccgtttgacccgcggatccacattaacccac |
61 |
Q |
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|||||||| ||||||||||||| | |||||||||||||||||| || |||||||||| |
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| T |
39383251 |
atacccttgtgtacccgtatttgtgacccgtttgacccgcggacccgaattaacccac |
39383194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 39290172 - 39290209
Alignment:
| Q |
78 |
cgggttgggtcgggccatgggtccttgtccagccctag |
115 |
Q |
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| T |
39290172 |
cgggttgggccgggccacgggtccttgtccagccctag |
39290209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 39383164 - 39383128
Alignment:
| Q |
78 |
cgggttgggtcgggccatgggtccttgtccagcccta |
114 |
Q |
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| T |
39383164 |
cgggttgggccgggccacgggtccttgtccagcccta |
39383128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 18554043 - 18554006
Alignment:
| Q |
78 |
cgggttgggtcgggccatgggtccttgtccagccctag |
115 |
Q |
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| T |
18554043 |
cgggttgggtcggtccacgggtccttgtccagccctag |
18554006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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