View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_2D_high_2 (Length: 536)
Name: NF1268_2D_high_2
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_2D_high_2 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 20 - 522
Target Start/End: Complemental strand, 33256380 - 33255878
Alignment:
| Q |
20 |
tgttcaagattgattgcatggaaggagttagtgggccaagtgtgggaatgaggaatgtgatatggtactcattgtgatgttggagtaatagttttgcaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33256380 |
tgttcaagattgattgcatggaaggagttagtggaccaagtgtgggaatgaggaatgtgatatggtactcattgtgatgttggagtaatagttttgcaaa |
33256281 |
T |
|
| Q |
120 |
ctcaacttgtggaatcaaatggctcagtccaggtgaaggaaccatggcaatgcatgttttgttctccatgatatgtaattcaatttgagatggaaaatga |
219 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33256280 |
ctcaacttgtggaatcaaatggctcaatccaggtgaaggaaccatagcaatgcatgttttgttctccatgatatgtaattcaatttgagatggcaaatga |
33256181 |
T |
|
| Q |
220 |
aaaacaagatatctttgtaagatggatatctcttgaagatggttttataacaatatatattttttgcctataactcttcaatttattgacgaaaatgctc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
33256180 |
aaaacaagatatctttgtaagatggatatctcttgaagatggttttataacaattttttttttttgcctagaactcttcaatttgttgacgaaaatgctc |
33256081 |
T |
|
| Q |
320 |
tggtggtaatctggagtacagtcggaagataaataatgtccgagtagaaattgctttacgtagattttcaaagttgggtccaaccaaaagacattaacca |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33256080 |
cggtggtaatctggagtacagtcggaagataaataatgtccgagtagaaattgctttatgtagattttcaaagttgggtccaaccaaaagacattaacca |
33255981 |
T |
|
| Q |
420 |
ttagagtgtaccaattatacaagaatgtttaaaagtatagcaacgcaatgcctttcaagaatattttaaggaacataattgagctttttgtgacaagtga |
519 |
Q |
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| T |
33255980 |
ttagagtgtaccaattatacaagaatgtttaaaagtatagcaacgcaatgcctttcaagaatattttaaggaacataattgagctttttgtgacaagtga |
33255881 |
T |
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| Q |
520 |
tgt |
522 |
Q |
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||| |
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| T |
33255880 |
tgt |
33255878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 8295375 - 8295625
Alignment:
| Q |
20 |
tgttcaagattgattgcatggaaggagttagtgggccaagtgtgggaatgaggaatgtgatatggtactcattgtgatgttggagtaatagttttgcaaa |
119 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |
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| T |
8295375 |
tgttcaagatggattgcatggaaggagttagtggaccaagtgtgggaatgaggaatgtgatatggtattcattgtgattttggagtaatagtttagcaaa |
8295474 |
T |
|
| Q |
120 |
ctcaacttgtggaatcaaatggctcagtccaggtgaaggaaccatggcaatgcatgttttgttctccatgatatgtaattcaatttgagatggaaaatga |
219 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||| |||||||| ||||||| ||||| |||| |
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| T |
8295475 |
ctcaactagtggaatcaaatggctcaatccaggtgaaggaaccatagcaatgcatgtctttttctccatg-catgtaattgaatttgacatggatgatga |
8295573 |
T |
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| Q |
220 |
aaaacaagatatctttgtaagatggatatctcttgaagatggttttataaca |
271 |
Q |
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||||||| ||| ||||||||||||||||||| | |||||| |||||||||| |
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| T |
8295574 |
aaaacaaagtatttttgtaagatggatatctcctaaagatgcttttataaca |
8295625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 504
Target Start/End: Original strand, 8295812 - 8295876
Alignment:
| Q |
440 |
aagaatgtttaaaagtatagcaacgcaatgcctttcaagaatattttaaggaacataattgagct |
504 |
Q |
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| T |
8295812 |
aagaatgtttaaaagcatagcattgcaatgcctttcatgaatattttatggaaaacaattgagct |
8295876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 20 - 516
Target Start/End: Complemental strand, 498 - 1
Alignment:
| Q |
20 |
tgttcaagattgattgcatggaaggagttagtgggccaagtgtgggaatgaggaatgtgatatggtactcattgtgatgttggagtaatagttttgcaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
498 |
tgttcaagattgattgcatggaaggagttagtggaccaagtgtgggaatgaggaatgtgatatggtactcattgtgatgttggagtaatagttttgcaaa |
399 |
T |
|
| Q |
120 |
ctcaacttgtggaatcaaatggctcagtccaggtgaaggaaccatggcaatgcatgttttgttctccatgatatgtaattcaatttgagatggaaaatga |
219 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
398 |
ctcaacttgtggaatcaaatggctcaatccaggtgaaggaaccatagcaatgcatgttttgttctccatgatatgtaattcaatttgagatggcaaatga |
299 |
T |
|
| Q |
220 |
aaaacaagatatctttgtaagatggatatctcttgaagatggttttataacaatatatattttttg-cctataactcttcaatttattgacgaaaatgct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||| ||||||||||||| |||||||||||||| |
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| T |
298 |
aaaacaagatatctttgtaagatggatatctcttgaagatggttttataacaattttttttttttgtcctagaactcttcaatttgttgacgaaaatgct |
199 |
T |
|
| Q |
319 |
ctggtggtaatctggagtacagtcggaagataaataatgtccgagtagaaattgctttacgtagattttcaaagttgggtccaaccaaaagacattaacc |
418 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
198 |
ccggtggtaatctggagtacagtcggaagataaataatgtccgagtagaaattgctttatgtagattttcaaagttgggtccaaccaaaagacattaacc |
99 |
T |
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| Q |
419 |
attagagtgtaccaattatacaagaatgtttaaaagtatagcaacgcaatgcctttcaagaatattttaaggaacataattgagctttttgtgacaag |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
98 |
attagagtgtaccaattatacaagaatgtttaaaagtatagcaacgcaatgcctttcaagaatattttaaggaacataattgagctttttgtgacaag |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 905214 - 905038
Alignment:
| Q |
20 |
tgttcaagattgattgcatggaaggagttagtgggccaagtgtgggaatgaggaatgtgatatggtactcattgtgatgttggagtaatagttttgcaaa |
119 |
Q |
| |
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||||||||| | |||||| |||||||| || || | |||||| ||||||| |||||||| | | | |||||||| ||||| |||||| |||| ||||| |
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| T |
905214 |
tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtgttgttgaagtaattgtttggcaaa |
905115 |
T |
|
| Q |
120 |
ctcaacttgtggaatcaaatggctcagtccaggtgaaggaaccatggcaatgcatgttttgttctccatgatatgta |
196 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||||||| |||||| ||||||| || | |||||| |||| |
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| T |
905114 |
ttcaacttgtggaattaaatggctaagtccaggggaaggaaccatagcaatgtatgtttttttattcatgatgtgta |
905038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 895426 - 895581
Alignment:
| Q |
20 |
tgttcaagattgattgcatggaaggagttagtgggccaagtgtgggaatgaggaatgtgatatggtactcattgtgatgttggagtaatagttttgcaaa |
119 |
Q |
| |
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||||||||| | |||||| |||||||| || || |||||| ||||||| |||||||| | | | |||||||||||||| |||||| |||| ||||| |
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| T |
895426 |
tgttcaagacttgttgcattgaaggagtaagaggagaaagtgttggaatgatgaatgtgacaatgaattcattgtgatgttgaagtaattgtttggcaaa |
895525 |
T |
|
| Q |
120 |
ctcaacttgtggaatcaaatggctcagtccaggtgaaggaaccatggcaatgcatg |
175 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| |
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| T |
895526 |
ttcaacttgtggaattaaatggcttagtccaggggaaggaaccatagcaatgcatg |
895581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 10253115 - 10253157
Alignment:
| Q |
33 |
ttgcatggaaggagttagtgggccaagtgtgggaatgaggaat |
75 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
10253115 |
ttgcatggaaggagtgagtggaccaagtgtgggaatgaggaat |
10253157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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