View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_2D_high_4 (Length: 424)
Name: NF1268_2D_high_4
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_2D_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 52578992 - 52578598
Alignment:
| Q |
1 |
atggtcaatctctattctctactgttctgcagacaaattcaagtttgattgagggtcgatggcagctcattttcactacaagacctggaacagcatcacc |
100 |
Q |
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| T |
52578992 |
atggtcaatctctattctcttctgttctgcagacaaattcaagtttgattgagggtcgatggcagctcattttcaccacaagacctggaacagcatcacc |
52578893 |
T |
|
| Q |
101 |
cattcaggttgttattattatgtcactgaaaagtaaatctctaatggaaagctgcatatactatttttctcatctataaatttagaaatatacttccaac |
200 |
Q |
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| T |
52578892 |
cattcaggttgttattattatgtcactgaaaagtaaatctctaatggaaagctgcatatactatgtttctcatctataaatttagaaatatacttccaac |
52578793 |
T |
|
| Q |
201 |
ttgataatacctatctaacacaacaaggatcactcacctgttcaatagttcaacacatgcttaatcatcatatcatatgactctcaatatggtattctat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
52578792 |
ttgataatacctatctaacacaacaaggatcactcacctgttcaatagttcaacacatgcttaatga---------------ctcaatatggtattctat |
52578708 |
T |
|
| Q |
301 |
attgctctttcagagaacgtttgttggggttgannnnnnnagtgtatttcaagaggtttatcttcaaacaaatgatccacgcgtaaccaatattgtgtca |
400 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578707 |
attgctctttcagagaacgtttgttggggttgatttttttagtgtatttcaagaggtttatcttcaaacaaatgatccacgcgtaaccaatattgtgtca |
52578608 |
T |
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