View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1268_2D_low_11 (Length: 398)

Name: NF1268_2D_low_11
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1268_2D_low_11
NF1268_2D_low_11
[»] chr2 (6 HSPs)
chr2 (1-398)||(933762-934159)
chr2 (73-379)||(33957193-33957502)
chr2 (1-147)||(33957572-33957718)
chr2 (73-147)||(33957500-33957574)
chr2 (73-147)||(33957536-33957610)
chr2 (1-42)||(934232-934273)


Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 934159 - 933762
Alignment:
Q  1 atcaacatactttctcttacactcttgtcgaaacttccctgattggcacccttcattatgactactttccaacaatttcttaacatgatcaccgtcactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  934159 atcaacatactttctcttacactcttgtcgaaacttccctgattggcacccttcattatgactactttccaacaatttcttaacatgatcaccgtcactt 934060  T
Q  101 tctttgctcaatttgttaacacaaacaccatcactttctttgctcaaacgaggttgaatccgaacatgcaaacattgacttaaatccaacttgaaactat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  934059 tctttgctcaatttgttaacacaaacaccatcactttctttgctcaaacgaggttgaatccgaacatgcaaacattcacttaaatccaacttgaaactat 933960  T
Q  201 caacgccacttaacaacctaaacctattcaaatcctcctctttaacacacgacgatacaatcagatcatcgatcaaaacaacccctttaacaattctaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  933959 caacgccacttaacaacctaaacctattcaaatcctcctctttaacacacgacgatacaatcagatcatcgatcaaaacaacccctttaacaattctaaa 933860  T
Q  301 gctatcaggataccaaatctgttgatgaagattcaaagggaaaaaacttgtgaattgttgacaaccctctgaaaattcagagttgggtaggtccaaat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  933859 gctatcaggataccaaatctgttgatgaagattcaaagggaaaaaacttgtgaattgttgacaaccctctgaaaattcagagttgggtaggtccaaat 933762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 73 - 379
Target Start/End: Complemental strand, 33957502 - 33957193
Alignment:
Q  73 caatttcttaacatgatcaccgtcactttctttgctcaatttgttaacacaaacaccatcactt---tctttgctcaaacgaggttgaatccgaacatgc 169  Q
    |||||| |||||||  ||||  ||||||||||| | ||||||||||||| || ||| ||||||    |||||||| || |||||||||||||||||| ||    
T  33957502 caatttattaacatagtcactatcactttcttttcccaatttgttaacataatcactatcactactctctttgctgaaccgaggttgaatccgaacacgc 33957403  T
Q  170 aaacattgacttaaatccaacttgaaactatcaacgccacttaacaacctaaacctattcaaatcctcctctttaacacacgacgatacaatcagatcat 269  Q
    | ||||| ||||||||||||||| ||||||||||| ||  | ||| ||||||||||||||||||||||||||||||||||| |||| ||| || ||||||    
T  33957402 agacattcacttaaatccaacttcaaactatcaacaccggtcaacgacctaaacctattcaaatcctcctctttaacacacaacgacacactcggatcat 33957303  T
Q  270 cgatcaaaacaacccctttaacaattctaaagctatcaggataccaaatctgttgatgaagattcaaagggaaaaaacttgtgaattgttgacaaccctc 369  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| || |||||||||| ||||||    
T  33957302 caatcaaaacaacccctttaacaattctaaagctatcaggataccaaatctgtttatgaagattcaaaggaaaaatactagtaaattgttgactaccctc 33957203  T
Q  370 tgaaaattca 379  Q
    ||||||||||    
T  33957202 tgaaaattca 33957193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 33957718 - 33957572
Alignment:
Q  1 atcaacatactttctcttacactcttgtcgaaacttccctgattggcacccttcattatgactactttccaacaatttcttaacatgatcaccgtcactt 100  Q
    ||||||||||||| | |||| |||||||||||||||||| ||||||||||| || ||| ||||||| |||||||| || || |||  ||| || ||||||    
T  33957718 atcaacatacttttttttacgctcttgtcgaaacttccccgattggcacccctccttaggactactctccaacaagttgttcacacaatcgccatcactt 33957619  T
Q  101 tctttgctcaatttgttaacacaaacaccatcactttctttgctcaa 147  Q
    || ||||||||||||||||||||| |||| |||||||| ||||||||    
T  33957618 tccttgctcaatttgttaacacaatcaccgtcactttccttgctcaa 33957572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 33957574 - 33957500
Alignment:
Q  73 caatttcttaacatgatcaccgtcactttctttgctcaatttgttaacacaaacaccatcactttctttgctcaa 147  Q
    |||||| |||||| | ||||  |||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  33957574 caatttgttaacacggtcactatcactttctttgctcaatttgttaacacagtcaccatcactttccttgctcaa 33957500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 33957610 - 33957536
Alignment:
Q  73 caatttcttaacatgatcaccgtcactttctttgctcaatttgttaacacaaacaccatcactttctttgctcaa 147  Q
    |||||| ||||||  ||||||||||||||| |||||||||||||||||||   ||| ||||||||||||||||||    
T  33957610 caatttgttaacacaatcaccgtcactttccttgctcaatttgttaacacggtcactatcactttctttgctcaa 33957536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 934273 - 934232
Alignment:
Q  1 atcaacatactttctcttacactcttgtcgaaacttccctga 42  Q
    ||||||||||||||||||||||||||||||||  ||||||||    
T  934273 atcaacatactttctcttacactcttgtcgaatattccctga 934232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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