View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_2D_low_12 (Length: 398)
Name: NF1268_2D_low_12
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_2D_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 20230970 - 20231349
Alignment:
| Q |
1 |
ctcaactttgtcaacaatgtatactaaatgcaacacaaagactttcctcacaatgttctttgtccaaagaaggtattgtttggtacaatgaatgtatggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20230970 |
ctcaactttgtcaacaatgtatactaaatgcaacacaaagactttccttgcaatgttctttgtctaaagaaggtattgtttggtacaatgaatgtatggt |
20231069 |
T |
|
| Q |
101 |
ttggtattcgacaacctttattttctccacggttgcaaggacaacacctacttttaacttgttgaacactgacaaagtcgcaaacccaaaaagtttcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
20231070 |
ttggtattcgacaacctttattttctccacggttgcaaggacaacacctacttttaacttgttgaatactgacaaagtcgcaaacccgaaaagtttcatg |
20231169 |
T |
|
| Q |
201 |
agtttattgttttctacaatgaacaaaacttcagatgaagcagcttttggtgacaaaaaatttgcatcaaatgcaataactatatcgaaatttcaaaccc |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20231170 |
agtttattgttttctacaatgaacaaaactgcagatgaagcagcttttggtgacaaaaaatttgcatcaaatgcaataactatatcgaaatttcaaaccc |
20231269 |
T |
|
| Q |
301 |
tttattgtttagttcaatgcacaccaaatttgtcaccacatgaatgtagaagttgtctaagtggattgatagaggaactt |
380 |
Q |
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| T |
20231270 |
tttattgtttagttcaatgcacaccaaatttgtcaccacatgaatgtagaagttgtctaagtggattgatagaggaactt |
20231349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 22124954 - 22125333
Alignment:
| Q |
1 |
ctcaactttgtcaacaatgtatactaaatgcaacacaaagactttcctcacaatgttctttgtccaaagaaggtattgtttggtacaatgaatgtatggt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22124954 |
ctcaactttgtcaacaatgtatactaaatgcaacacaaagactttccttgcaatgttctttgtctaaagaaggtattgtttggtacaatgaatgtatggt |
22125053 |
T |
|
| Q |
101 |
ttggtattcgacaacctttattttctccacggttgcaaggacaacacctacttttaacttgttgaacactgacaaagtcgcaaacccaaaaagtttcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
22125054 |
ttggtattcgacaacctttattttctccacggttgcaaggacaacacctacttttaacttgttgaatactgacaaagtcgcaaacccgaaaagtttcatg |
22125153 |
T |
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| Q |
201 |
agtttattgttttctacaatgaacaaaacttcagatgaagcagcttttggtgacaaaaaatttgcatcaaatgcaataactatatcgaaatttcaaaccc |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22125154 |
agtttattgttttctacaatgaacaaaactgcagatgaagcagcttttggtgacaaaaaatttgcatcaaatgcaataactatatcgaaatttcaaaccc |
22125253 |
T |
|
| Q |
301 |
tttattgtttagttcaatgcacaccaaatttgtcaccacatgaatgtagaagttgtctaagtggattgatagaggaactt |
380 |
Q |
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| T |
22125254 |
tttattgtttagttcaatgcacaccaaatttgtcaccacatgaatgtagaagttgtctaagtggattgatagaggaactt |
22125333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 10403920 - 10403556
Alignment:
| Q |
1 |
ctcaactttgtcaacaatgtatactaaatgcaacacaaagactttcctcacaatgttctttgtccaaagaaggtattgtttggtacaatgaatgtatggt |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| ||||||||| |||||||||| ||||||||||||| |
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| T |
10403920 |
ctcaactttgtcaacaatgtatagtaaatgcaacacaaagactttccttagaatgttctttgtcaaaagaaggtgttgtttggtatgatgaatgtatggt |
10403821 |
T |
|
| Q |
101 |
ttggtattcgacaacctttattttctccacggttgcaaggacaacacctacttttaacttgttgaacactgacaaagtcgcaaacccaaaaagtttcatg |
200 |
Q |
| |
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||||||||| |||||||| || |||| || || ||| |||| |||||||||| || | |||||| ||||| || ||| ||||||| |
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| T |
10403820 |
ttggtattccacaacctt------------ggcagcaa---catcaactagtttttacttgttgaatacaaataaagtctcaaacacacaaaatttcatg |
10403736 |
T |
|
| Q |
201 |
agtttattgttttctacaatgaacaaaacttcagatgaagcagcttttggtgacaaaaaatttgcatcaaatgcaataactatatcgaaatttcaaaccc |
300 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||| |
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| T |
10403735 |
agtttattgttttctacaatgaacaaaacctcaaatgaagcagcttttggtgacaaaaaatatgcatctaatgaaataactatatcaaaatttcaaaccc |
10403636 |
T |
|
| Q |
301 |
tttattgtttagttcaatgcacaccaaatttgtcaccacatgaatgtagaagttgtctaagtggattgatagaggaactt |
380 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| |
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| T |
10403635 |
tttattgtttagctcaatgcacaccaaatttgtcaccacatgattgtagaacttgtctaagtggattgatagagaaactt |
10403556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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