View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_2D_low_14 (Length: 388)
Name: NF1268_2D_low_14
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_2D_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 25708571 - 25708202
Alignment:
| Q |
19 |
acataaaaagccaatttttccctgtccagaatatatgcttcccagtggaatcatattaaaggggtgttaacgtgttcatataccatcttattatggtatc |
118 |
Q |
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| T |
25708571 |
acataaaaagccaatttttccctgtccagaatatatgcttcccagtggaatcatattaaaggggtgttaacgtgttcatataccatcttattatggtatc |
25708472 |
T |
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| Q |
119 |
aacttttgacactaaccaatgaatgtggtaacataaccacccctcaaatagcatacacacttttctatttagaatttagagccctctttctgccaccacc |
218 |
Q |
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| T |
25708471 |
aacttttgacactaaccaatgaatgtggtaacataaccacccctcaaatagcatacacacttttctatttagaatttagagccctctttctgccaccacc |
25708372 |
T |
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| Q |
219 |
ccaattaatcaatcatacacataaattgatcccaatgcaaattgaatgatgttagtggtatttattaaccgatcataaagttattgtacaatattaagta |
318 |
Q |
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| T |
25708371 |
ccaattaatcaatcatacacataaattgatcccaatgcaaattgaatgatgttagtggtatttattaaccgatcataaagttattgtacaatattaagta |
25708272 |
T |
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| Q |
319 |
ctagtgtgacaagagagttcacccaaacacttcaactatgagagatcaaagagtccttcatattgaagat |
388 |
Q |
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| T |
25708271 |
ctagtgtgacaagagagttcacccaaacacttcaactatgagagatcaaagagtccttcatattgaagat |
25708202 |
T |
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