View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_2D_low_16 (Length: 383)
Name: NF1268_2D_low_16
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_2D_low_16 |
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| [»] scaffold0094 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0094 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 42226 - 41844
Alignment:
| Q |
1 |
gcagaatgctcctaccccaccatgcctggccctttaccttaccttaagaataagggggtatgcagcgtgggaaagaattaaagaagtgtctgatacaaca |
100 |
Q |
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| T |
42226 |
gcagaatgctcctaccccaccatgcctggccctttacattaccttaagaataatggggtatgcagcgtggaaaagaattaaagaagtgtctgatacaaca |
42127 |
T |
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| Q |
101 |
ggtaaccttaaggagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagacgcttcgtaaaaccgcaccgatctacgagaggagctga |
200 |
Q |
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| T |
42126 |
ggtaacattaaggagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagatgcttcgtaaaactgcaccgatctacgagaggagctga |
42027 |
T |
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| Q |
201 |
tggatgagtaggcttcccctttcgatttacggaatgtgatctgggacacgatgggggtttgcgtgcctcggtaggaaagagatcaccggagtatagcaca |
300 |
Q |
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| T |
42026 |
tcgatgagtaggcttcccctttcgatttaccgaatgttatatgggacacgatgggggtttgcgtgcctcggtaggaaagagatcaccggagtatagcaca |
41927 |
T |
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| Q |
301 |
agatcgccnnnnnnncttgctgccatggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccac |
383 |
Q |
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| T |
41926 |
agatcgccttgttttcttgctgtcatggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccac |
41844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 45353023 - 45352857
Alignment:
| Q |
16 |
cccaccatgcctggccctttaccttaccttaagaataagggggtatgcagcgtgggaaagaattaaagaagtgtctgat---acaacaggtaaccttaag |
112 |
Q |
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| T |
45353023 |
cccaccatgtctggccctttaccttaccttaagaataagggggtatgcaacatgtaaaagaattaaagatgtgtttgatacaacaacaggtaatcttaag |
45352924 |
T |
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| Q |
113 |
gagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagacgcttcgtaaaaccgcac |
180 |
Q |
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| T |
45352923 |
aagtggcggcgaagctcttaattg-tcaacactagtgaactgtgcttagacgctttgtgaaactgcac |
45352857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 45362502 - 45362336
Alignment:
| Q |
16 |
cccaccatgcctggccctttaccttaccttaagaataagggggtatgcagcgtgggaaagaattaaagaagtgtctgat---acaacaggtaaccttaag |
112 |
Q |
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| T |
45362502 |
cccaccatgtctggccctttaccttaccttaagaataagggggtatgcaacatgtaaaagaattaaagatgtgtttgatacaacaacaggtaatcttaag |
45362403 |
T |
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| Q |
113 |
gagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagacgcttcgtaaaaccgcac |
180 |
Q |
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| T |
45362402 |
aagtggcggcgaagctcttaattg-tcaacactagtgaactgtgcttagacgctttgtgaaactgcac |
45362336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 45354608 - 45354446
Alignment:
| Q |
5 |
aatgctcctaccccaccatgcctggccctttaccttaccttaagaataagggggtatgcagcgtgggaaagaattaaagaagtgtctgatacaacaggta |
104 |
Q |
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| T |
45354608 |
aatgctcctatcccaccatgtctgaccctttaccttaccttaagaataaggaggtatgcagcgtggaaaagaattaaagaagtg------------ggta |
45354521 |
T |
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| Q |
105 |
accttaaggagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagacgcttcgtaaaaccgcac |
180 |
Q |
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| T |
45354520 |
actttaagaagtagtggcaaagctcttga-tgatcaacgctagtgaactgtgattagatgctttgtaaaaccgcac |
45354446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 45368349 - 45368187
Alignment:
| Q |
5 |
aatgctcctaccccaccatgcctggccctttaccttaccttaagaataagggggtatgcagcgtgggaaagaattaaagaagtgtctgatacaacaggta |
104 |
Q |
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| T |
45368349 |
aatgctcctatcccaccatgtctgaccctttaccttaccttaagaataaggaggtatgcagcgtggaaaagaattaaagaagtg------------ggta |
45368262 |
T |
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| Q |
105 |
accttaaggagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagacgcttcgtaaaaccgcac |
180 |
Q |
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| T |
45368261 |
actttaagaagtagtggcaaagctcttga-tgatcaacgctagtgaactgtgattagatgctttgtaaaaccgcac |
45368187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 320 - 383
Target Start/End: Original strand, 37882279 - 37882342
Alignment:
| Q |
320 |
ctgccatggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccac |
383 |
Q |
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| T |
37882279 |
ctgccatggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccac |
37882342 |
T |
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