View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_2D_low_18 (Length: 353)
Name: NF1268_2D_low_18
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_2D_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 3 - 334
Target Start/End: Original strand, 5958367 - 5958698
Alignment:
| Q |
3 |
agtagcaaatttcacattcaaccatctaaaagcgaaagacttaatcctatcgaccacttgacttattaagcaaattttgtcgttaaaatacctgctattt |
102 |
Q |
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| T |
5958367 |
agtagcaaatttcaccttcaaccacctaaaaacgagagacttaatcctatcgatcacctgatttattaagcaaattttgtcgttaaaatgtctgctattt |
5958466 |
T |
|
| Q |
103 |
ctttctttcttatttctttcgatatttggaaaatggtgatttaattaaccacgtaatacatattagcctacccacaaagaatatcttgattggagaacat |
202 |
Q |
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| T |
5958467 |
ctttctttcttatttctttcgatatttggaaaatggtgatttaattaaccacgtaatacatattagcctacccacagagaatatcttgattggagaacat |
5958566 |
T |
|
| Q |
203 |
ttgaaaatatatcctaataagctcgatatctatagagcatatatatccttttcaaaaacctatattaaaacgtgtaaatgacgttgttcgttttcatata |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5958567 |
ttgaaaatatatcctaataagctcgatatctatagagcatatatatccttttcaaaaacctatattaaaacgtgtaaatgacgttgttcgttttcatata |
5958666 |
T |
|
| Q |
303 |
cgctactagtgctaatggataccctaattatg |
334 |
Q |
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| T |
5958667 |
cgctactagtgctaatggataccctaattatg |
5958698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 37929167 - 37929057
Alignment:
| Q |
1 |
agagtagcaaatttcacattcaaccatctaaaagcgaaagacttaatcctatcgaccacttgacttattaagcaaattttgtcgttaaaatacctgctat |
100 |
Q |
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||||||| ||||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||| |
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| T |
37929167 |
agagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctgacttattaagcaaatttagtcgttaaaatgcctgttat |
37929068 |
T |
|
| Q |
101 |
ttctttctttc |
111 |
Q |
| |
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||||||||||| |
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| T |
37929067 |
ttctttctttc |
37929057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 31686467 - 31686577
Alignment:
| Q |
1 |
agagtagcaaatttcacattcaaccatctaaaagcgaaagacttaatcctatcgaccacttgacttattaagcaaattttgtcgttaaaatacctgctat |
100 |
Q |
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||||||| ||||||| | |||||||| ||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||| ||| |
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| T |
31686467 |
agagtaggaaatttctccttcaaccacctaaaagcgcgagacttaattctatcgaccacctgacttattaagcatattttgtcgttaaaatgtctgttat |
31686566 |
T |
|
| Q |
101 |
ttctttctttc |
111 |
Q |
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| T |
31686567 |
ttctttctttc |
31686577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 38153965 - 38153878
Alignment:
| Q |
1 |
agagtagcaaatttcacattcaaccatctaaaagcgaaagacttaatcctatcgaccacttgacttattaagcaaattttgtcgttaa |
88 |
Q |
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||||||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
38153965 |
agagtaggaaatttcaccttcaaccacctaaaagcgagagacttaatcctatcgaccacctgacttattaagcatattttgtcgttaa |
38153878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 33645875 - 33645985
Alignment:
| Q |
1 |
agagtagcaaatttcacattcaaccatctaaaagcgaaagacttaatcctatcgaccacttgacttattaagcaaattttgtcgttaaaatacctgctat |
100 |
Q |
| |
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|||||||||||||| | |||||||| ||||| |||| ||||||||| |||| |||| |||||||| |||| ||| |||||||||| | || ||| |
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| T |
33645875 |
agagtagcaaatttttccttcaaccacctaaatgcgagcgacttaatcttatcaaccatctgacttatcgagcattctttatcgttaaaatgcatgttat |
33645974 |
T |
|
| Q |
101 |
ttctttctttc |
111 |
Q |
| |
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||||||||||| |
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| T |
33645975 |
ttctttctttc |
33645985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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