View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_2D_low_19 (Length: 349)
Name: NF1268_2D_low_19
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_2D_low_19 |
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| [»] scaffold0743 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 17944434 - 17944767
Alignment:
| Q |
1 |
ctgtgttatggacttccccctgtttttcagcaacatgatttgatttttcgagagctctcttttgtgattggctgctaannnnnnnn-gccatgctttctg |
99 |
Q |
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| T |
17944434 |
ctgtgttatggacttcctcctgtttttcagcaacatgctttgatttttcgaaagctctctttagtgattggctgctaatttttttttgccatgctttctg |
17944533 |
T |
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| Q |
100 |
gacaatttactggatatagaaattctgtttattaataatgaaaaataatttttcaattggaaattgtcttgcatatttataaaacaatgaaagtgccaaa |
199 |
Q |
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| T |
17944534 |
gacaatttactggatagaaaaattctgtttattaataatgaaaaagaatttttcaactggaaattgtcttgcatatttataaaacaatgaaagtgccaaa |
17944633 |
T |
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| Q |
200 |
ataattgttttcatcttttatttaatggataatggatcatctttagctatagctaga-tatatannnnnnnnnaagaatagcattttatcttcattcatc |
298 |
Q |
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| T |
17944634 |
ataattgttttcatc-tttatttaatggataatggatcatctttagctatagctagattttttttttttttttaagaattgcattttatctttattcatc |
17944732 |
T |
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| Q |
299 |
acaatgactttataaattaaatgtttaactattct |
333 |
Q |
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| T |
17944733 |
acaatgactttataaattaaatgtttaactattct |
17944767 |
T |
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Target: scaffold0743 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 4328 - 4266
Alignment:
| Q |
276 |
atagcattttatcttcattcatcacaatgactttataaattaaatgtttaactattcttgatg |
338 |
Q |
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| T |
4328 |
atagcattttatctattttcatcacaatgactttataaattcaatgtttaactattctagatg |
4266 |
T |
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