View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1268_2D_low_2 (Length: 758)

Name: NF1268_2D_low_2
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1268_2D_low_2
NF1268_2D_low_2
[»] chr5 (5 HSPs)
chr5 (223-739)||(14088806-14089340)
chr5 (8-232)||(14087331-14087558)
chr5 (346-403)||(39290085-39290142)
chr5 (346-403)||(39383194-39383251)
chr5 (420-457)||(39290172-39290209)
[»] chr3 (2 HSPs)
chr3 (58-323)||(2430331-2430603)
chr3 (299-402)||(31618181-31618294)
[»] chr6 (1 HSPs)
chr6 (58-246)||(12188880-12189070)
[»] chr1 (2 HSPs)
chr1 (58-156)||(22901959-22902057)
chr1 (420-457)||(18554006-18554043)
[»] chr8 (1 HSPs)
chr8 (54-142)||(16309003-16309091)
[»] chr7 (2 HSPs)
chr7 (61-156)||(19975945-19976040)
chr7 (289-330)||(19976177-19976218)


Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 223 - 739
Target Start/End: Original strand, 14088806 - 14089340
Alignment:
Q  223 atgagtgagtgagatctagggttaatgagtctccccttctatctgatactaagacgacatcgtttctaataatcatatacgggcgggttcgggtacccgc 322  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14088806 atgagtgagtgagatctagggttaatgagtctccccttctctctgatactaagacgacatcgtttctaataatcatatacgggcgggttcgggtacccgc 14088905  T
Q  323 gagtgaagctcctctacccatttatacccttatgtacccgtattttttacccgtttgacccgcggatccacattaacccacacaactcggnnnnnnn--- 419  Q
    | ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| | ||  ||||||||||||| ||||               
T  14088906 gggtgaagctcctctacccatctatacccttatgtactcgtattttttacccgtttgacctgcgaacccgtattaacccacacagctcgttttttttttt 14089005  T
Q  420 ---cgggttgggtcgggccatgggtccttgtccagccctagatttagtggtaaaaagaaaggctttggatctagaggtttagaattcgagtctcgctagt 516  Q
       |||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14089006 ttccgggttgggttgggccacgggtccttgtccagccctagatttggtggtaaaaagaaaggctttggatctagaggtttagaattcgagtctggctagt 14089105  T
Q  517 gtccttaaaggaaactaaatgtaaatatctatgtaattgctctttaaaccctaagatcttatctttcttggaccggaacaccatccaacaaccctagttt 616  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14089106 gtccttaaaggaagctaaatgtaaatatctatgtaattgttctttaaaccttaagatcttatctttcttggaccggaacaccatccaacaaccctaattt 14089205  T
Q  617 ttaacttatnnnnnnnctgcctaataaccttgcctaggcatgtcatttaacgcac------------aacaataatgaatcgtttcgtgggactccaaca 704  Q
    |||||||||       ||||||||||||||||||||||||||||||||||| |||            |||||||||||||||||||||||||||||||||    
T  14089206 ttaacttataaaaaaactgcctaataaccttgcctaggcatgtcatttaactcacaacatatgagtgaacaataatgaatcgtttcgtgggactccaaca 14089305  T
Q  705 tatgagagaatgtttgtgccagtcatacacaatat 739  Q
    |||||||||||||||||||||||||||||||||||    
T  14089306 tatgagagaatgtttgtgccagtcatacacaatat 14089340  T

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Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 14087331 - 14087558
Alignment:
Q  8 cgactgagatgaagaaggaggaggaggacgaagtttcgcattgtcctgatagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatg 107  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  14087331 cgactgaagtgaagaaggaggaggaggacgaagtttcgcgttgtcctgacagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcata 14087430  T
Q  108 ttggtatgaggatttgagggtgaggtggtggtggtgagaaacggcggcg---ctagggtttgtggaggaaggtgaaagagtgtgaggcgagggagagaaa 204  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14087431 ttggtatgaggatttgagggcgaggtggtggtggtgagaaacggcggcggcactagggtttgtggaggaaggtgaaagagtgtgaggcgagggagagaaa 14087530  T
Q  205 tttgtagaagaaatgagaatgagtgagt 232  Q
    ||||||||||||||||||||||||||||    
T  14087531 tttgtagaagaaatgagaatgagtgagt 14087558  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 39290085 - 39290142
Alignment:
Q  346 atacccttatgtacccgtattttttacccgtttgacccgcggatccacattaacccac 403  Q
    |||||||| ||||||||||||| | |||||||||||||||||| ||  ||||||||||    
T  39290085 atacccttgtgtacccgtatttgtgacccgtttgacccgcggacccgaattaacccac 39290142  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 39383251 - 39383194
Alignment:
Q  346 atacccttatgtacccgtattttttacccgtttgacccgcggatccacattaacccac 403  Q
    |||||||| ||||||||||||| | |||||||||||||||||| ||  ||||||||||    
T  39383251 atacccttgtgtacccgtatttgtgacccgtttgacccgcggacccgaattaacccac 39383194  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 39290172 - 39290209
Alignment:
Q  420 cgggttgggtcgggccatgggtccttgtccagccctag 457  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  39290172 cgggttgggccgggccacgggtccttgtccagccctag 39290209  T

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Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 58 - 323
Target Start/End: Complemental strand, 2430603 - 2430331
Alignment:
Q  58 agagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtatgaggatttgagggtgaggtggtggtggtgagaaacggcggcg- 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||  ||||||||     
T  2430603 agagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgaggtggtggtggttagaggcggcggcgg 2430504  T
Q  157 --ctagggtttgtggaggaaggtgaaagagtgtgaggcgagggagagaaatttgtagaagaaatga---gaatgagtgagtgagatctagggttaatgag 251  Q
      ||||||||||  ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||    ||||| ||||| ||||||||||||| ||||    
T  2430503 cactagggtttgaagaggaaggtgaaagagtgtgaggcgagtgagagaattttttagaagaaatgaatgaaatgaatgagtcagatctagggttagtgag 2430404  T
Q  252 tctcccc-ttctatctgatactaagacgacatcgtttctaataatcatatacgggcgggttcgggtacccgcg 323  Q
    |||||||  |||     ||||||| ||||| |||||| || |||||  ||||||| |||||||||||||||||    
T  2430403 tctccccactcttcaatatactaaaacgacgtcgtttttactaatccaatacgggtgggttcgggtacccgcg 2430331  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 299 - 402
Target Start/End: Complemental strand, 31618294 - 31618181
Alignment:
Q  299 atacgggcgggttcgggtacccgcgagtgaagctc----------ctctacccatttatacccttatgtacccgtattttttacccgtttgacccgcgga 388  Q
    ||||||||||||||||||||||||| |||||||||          |||| ||||||||||||||| |||| ||||||||   ||||||||| ||||||||    
T  31618294 atacgggcgggttcgggtacccgcgggtgaagctccttcacccctctctgcccatttatacccttgtgtaaccgtatttacaacccgtttggcccgcgga 31618195  T
Q  389 tccacattaaccca 402  Q
     || | ||||||||    
T  31618194 cccgctttaaccca 31618181  T

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Target: chr6 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 12189070 - 12188880
Alignment:
Q  58 agagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtatgaggatttgagggtgaggtggtggtggtgagaaacggcggcg- 156  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||  ||||||||     
T  12189070 agagaacggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgtggtggtggtggttagatgcggcggcgg 12188971  T
Q  157 --ctagggtttgtggaggaaggtgaaagagtgtgaggcgagggagagaaatttgtagaagaaatgagaatgagtgagtgagatctagggtta 246  Q
      ||||||||||  ||||||||||||||||||||||| ||  ||||||| ||| |||||||||||| ||||| || || |||||||||||||    
T  12188970 cactagggtttgaagaggaaggtgaaagagtgtgaggtgaatgagagaattttttagaagaaatga-aatgaatgggttagatctagggtta 12188880  T

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Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 22901959 - 22902057
Alignment:
Q  58 agagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtatgaggatttgagggtgaggtggtggtggtgagaaacggcggcg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||| || |||||    
T  22901959 agagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgaggtggttgtggttagaagcgacggcg 22902057  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 457
Target Start/End: Complemental strand, 18554043 - 18554006
Alignment:
Q  420 cgggttgggtcgggccatgggtccttgtccagccctag 457  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  18554043 cgggttgggtcggtccacgggtccttgtccagccctag 18554006  T

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Target: chr8 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 16309003 - 16309091
Alignment:
Q  54 tgatagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtatgaggatttgagggtgaggtggtggtggt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||    
T  16309003 tgatagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttgataggaggatttgatggtgaggtggttgtggt 16309091  T

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Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 19975945 - 19976040
Alignment:
Q  61 gaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtatgaggatttgagggtgaggtggtggtggtgagaaacggcggcg 156  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||| || | ||| |||| ||||||||    
T  19975945 gaaaggcgtaaaacaaagtgaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgaggttgttggggttagaagcggcggcg 19976040  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 19976177 - 19976218
Alignment:
Q  289 taataatcatatacgggcgggttcgggtacccgcgagtgaag 330  Q
    ||||||| | ||||||||||||||||||||||||| ||||||    
T  19976177 taataattaaatacgggcgggttcgggtacccgcgggtgaag 19976218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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