View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1268_2D_low_22 (Length: 256)

Name: NF1268_2D_low_22
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1268_2D_low_22
NF1268_2D_low_22
[»] chr4 (28 HSPs)
chr4 (3-110)||(4009152-4009259)
chr4 (3-110)||(3956349-3956456)
chr4 (152-237)||(3956251-3956336)
chr4 (152-237)||(3800864-3800949)
chr4 (152-237)||(4009272-4009357)
chr4 (152-233)||(4024508-4024589)
chr4 (161-237)||(4001591-4001667)
chr4 (164-237)||(3986283-3986356)
chr4 (163-237)||(3809300-3809374)
chr4 (163-237)||(3920507-3920581)
chr4 (21-110)||(3800762-3800851)
chr4 (170-237)||(3933731-3933798)
chr4 (170-237)||(3816890-3816957)
chr4 (104-155)||(4009049-4009100)
chr4 (107-155)||(4001333-4001381)
chr4 (107-151)||(3800631-3800675)
chr4 (112-154)||(4217668-4217710)
chr4 (161-237)||(4217925-4218001)
chr4 (107-154)||(3986037-3986084)
chr4 (107-153)||(3920771-3920817)
chr4 (107-153)||(3933992-3934038)
chr4 (163-237)||(3964030-3964104)
chr4 (163-237)||(4018004-4018078)
chr4 (110-156)||(4024271-4024317)
chr4 (107-156)||(3956511-3956560)
chr4 (3-95)||(3920620-3920716)
chr4 (3-95)||(3933841-3933937)
chr4 (111-155)||(3816640-3816685)
[»] chr5 (3 HSPs)
chr5 (152-237)||(13397223-13397308)
chr5 (6-110)||(13397107-13397210)
chr5 (107-154)||(13397002-13397049)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 4009152 - 4009259
Alignment:
Q  3 atgtaaaagaaaatcaaaatattttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatcatagataa 102  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  4009152 atgtaaaagaaaatcaaaatactttttaccaaaatgacaaatgttatctaaaattgccaaatatattttaccttgtcgtttttcaatacatcatagataa 4009251  T
Q  103 tatcagga 110  Q
    ||||||||    
T  4009252 tatcagga 4009259  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 3956456 - 3956349
Alignment:
Q  3 atgtaaaagaaaatcaaaatattttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatcatagataa 102  Q
    |||||||||||||||||||||||||| |||| ||  |||||||||||||||||| ||||||||| || ||||||||| ||||||||||||||||||||||    
T  3956456 atgtaaaagaaaatcaaaatatttttcaccagaaagacaaatgttatctaaaattgccaaatattttttaccttgtcatttttcaatacatcatagataa 3956357  T
Q  103 tatcagga 110  Q
    ||||||||    
T  3956356 tatcagga 3956349  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 3956336 - 3956251
Alignment:
Q  152 ctgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3956336 ctgcattttctagggtcttcactggattcttggcgaacaacctcccgacccatttcttgtagaatgtcatgcatggatataacatt 3956251  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 3800864 - 3800949
Alignment:
Q  152 ctgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  3800864 ctgcattttctagggtcttcactatattcttggcgaacaacctcccgacccatttctcatagaatgtcatgcatagatataacatt 3800949  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 4009272 - 4009357
Alignment:
Q  152 ctgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    ||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4009272 ctgcattttataggatcttcactagattcttaacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatattacatt 4009357  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 4024508 - 4024589
Alignment:
Q  152 ctgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataa 233  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4024508 ctgcgttttctagggtctgcactagattcttggcgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataa 4024589  T

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Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 4001591 - 4001667
Alignment:
Q  161 ctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  4001591 ctagggtcttcactagattcttggcgaacaacctcccgacccatttcttgtaaaatgtcatgcatagatacaacatt 4001667  T

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Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 3986283 - 3986356
Alignment:
Q  164 gggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3986283 gggtattcactagattcttggcgaacaacctcccgacccatttcttgaagaatgtcatgcatagatataacatt 3986356  T

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Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 3809300 - 3809374
Alignment:
Q  163 agggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    ||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3809300 agggtgttctctagattcttggcgaactacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 3809374  T

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Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 3920581 - 3920507
Alignment:
Q  163 agggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    ||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3920581 agggtgttctctagattcttggcgaactacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 3920507  T

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Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 3800762 - 3800851
Alignment:
Q  21 atattttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatcatagataatatcagga 110  Q
    |||||||| |||||||| ||| ||||||||| |||| ||||||||| || ||||||||| ||||||||||||||||||||||||||||||    
T  3800762 atatttttaaccaaaataacatatgttatctgaaatagccaaatattttttaccttgtcatttttcaatacatcatagataatatcagga 3800851  T

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Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 3933798 - 3933731
Alignment:
Q  170 tcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  3933798 tcactagattcttgccgaacaacctcccaacccatttcttgaagaatgtcatgcatagatataacatt 3933731  T

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Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 3816890 - 3816957
Alignment:
Q  170 tcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    |||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    
T  3816890 tcactagattcttgccgaacaatctcccaacccatttcttgaagaatgtcatgcatagatataacatt 3816957  T

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Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 4009100 - 4009049
Alignment:
Q  104 atcaggaagctgaagttaagccctcatgtatttgctaagatgaccaacctgc 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4009100 atcaggaagctgaagttaagccctcatgtatttgctaagatgaccaacctgc 4009049  T

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Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 4001381 - 4001333
Alignment:
Q  107 aggaagctgaagttaagccctcatgtatttgctaagatgaccaacctgc 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4001381 aggaagctgaagttaagccctcatgtatttgctaagatgaccaacctgc 4001333  T

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Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 3800675 - 3800631
Alignment:
Q  107 aggaagctgaagttaagccctcatgtatttgctaagatgaccaac 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3800675 aggaagctgaagttaagccctcatgtatttgctaagatgaccaac 3800631  T

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Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 4217710 - 4217668
Alignment:
Q  112 gctgaagttaagccctcatgtatttgctaagatgaccaacctg 154  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4217710 gctgaagttaagccctcatgtatttgctaagatgaccaacctg 4217668  T

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Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 4217925 - 4218001
Alignment:
Q  161 ctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    |||||||||| | |||||||| | |||||||||||||||||||| | |||| ||| ||||||||||||||| |||||    
T  4217925 ctagggtctttaatagattctaggcgaacaacctcccgacccatcttttgttgaaagtcatgcatagatattacatt 4218001  T

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Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 3986084 - 3986037
Alignment:
Q  107 aggaagctgaagttaagccctcatgtatttgctaagatgaccaacctg 154  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  3986084 aggaagctgaagttaagccctgatgtatttgctaagatgacgaacctg 3986037  T

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Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 3920771 - 3920817
Alignment:
Q  107 aggaagctgaagttaagccctcatgtatttgctaagatgaccaacct 153  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||    
T  3920771 aggaagctaaagttaagccctcatgtatttgataagatgaccaacct 3920817  T

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Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 3933992 - 3934038
Alignment:
Q  107 aggaagctgaagttaagccctcatgtatttgctaagatgaccaacct 153  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||    
T  3933992 aggaagctaaagttaagccctcatgtatttgataagatgaccaacct 3934038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 3964104 - 3964030
Alignment:
Q  163 agggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    ||||||| |||| |||||||| ||||||| ||||| |||||| ||||||| |||  |||||||||||||||||||    
T  3964104 agggtctccacttgattcttggcgaacaatctccctacccatgtcttgtataattccatgcatagatataacatt 3964030  T

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Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 4018004 - 4018078
Alignment:
Q  163 agggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    ||||||| || | |||||||| |||||||  |||| |||||||||||||| |||||||||||| |||||||||||    
T  4018004 agggtctccatttgattcttggcgaacaatttccctacccatttcttgtataatgtcatgcatggatataacatt 4018078  T

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Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 4024317 - 4024271
Alignment:
Q  110 aagctgaagttaagccctcatgtatttgctaagatgaccaacctgca 156  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  4024317 aagctgatgttaagctctcatgcatttgctaagatgaccaacctgca 4024271  T

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Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 3956511 - 3956560
Alignment:
Q  107 aggaagctgaagttaagccctcatgtatttgctaagatgaccaacctgca 156  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||||||||||    
T  3956511 aggaaactgaagttaagccccaatgtatttgataagatgaccaacctgca 3956560  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 3920716 - 3920620
Alignment:
Q  3 atgtaaaagaaaatcaaaatat----tttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatca 95  Q
    ||||||||||||||||||||||    ||||||||||||| || | |||||||| |||  |||| |||   | ||||||||| |||||||||||||||    
T  3920716 atgtaaaagaaaatcaaaatatatactttttaccaaaatgactattgttatctgaaaatgccatataatgtttaccttgtcatttttcaatacatca 3920620  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 3933937 - 3933841
Alignment:
Q  3 atgtaaaagaaaatcaaaatat----tttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatca 95  Q
    ||||||||||||||||||||||    ||||||||||||| || | |||||||| |||  |||| |||   | ||||||||| |||||||||||||||    
T  3933937 atgtaaaagaaaatcaaaatatatactttttaccaaaatgactattgttatctgaaaatgccatataatgtttaccttgtcatttttcaatacatca 3933841  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 3816685 - 3816640
Alignment:
Q  111 agctgaagttaagccctcatgta-tttgctaagatgaccaacctgc 155  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||    
T  3816685 agctgaagttaagccgtcatgtattttgataagatgaccaacctgc 3816640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 13397223 - 13397308
Alignment:
Q  152 ctgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 237  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  13397223 ctgcattttctagggtcttcactagattcttggcgaacaacctcgcgacccatttcctgtagaatgtcatgcatagatataacatt 13397308  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 13397107 - 13397210
Alignment:
Q  6 taaaagaaaatcaaaatattttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatcatagataatat 105  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | || ||||||||| |||||||||||||| ||||||||||    
T  13397107 taaaagaaaatcaaaatattttttaccaaaatgacaaatgttatctaaaattgccaaat-ttttttaccttgtcatttttcaatacatcgtagataatat 13397205  T
Q  106 cagga 110  Q
    |||||    
T  13397206 cagga 13397210  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 13397049 - 13397002
Alignment:
Q  107 aggaagctgaagttaagccctcatgtatttgctaagatgaccaacctg 154  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||||    
T  13397049 aggaagctgaagttaagcccgcctgtatttgataagatgaccaacctg 13397002  T

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