View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1268_2D_low_28 (Length: 227)

Name: NF1268_2D_low_28
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1268_2D_low_28
NF1268_2D_low_28
[»] chr4 (13 HSPs)
chr4 (3-208)||(4009152-4009357)
chr4 (3-208)||(3956251-3956456)
chr4 (21-208)||(3800762-3800949)
chr4 (71-204)||(4024456-4024589)
chr4 (3-208)||(3920507-3920716)
chr4 (71-208)||(3809237-3809374)
chr4 (3-208)||(3933731-3933937)
chr4 (71-208)||(4001530-4001667)
chr4 (63-208)||(3986211-3986356)
chr4 (71-208)||(3816823-3816957)
chr4 (104-208)||(4217897-4218001)
chr4 (71-208)||(3964030-3964164)
chr4 (110-208)||(4017980-4018078)
[»] chr5 (1 HSPs)
chr5 (6-208)||(13397107-13397308)
[»] chr8 (1 HSPs)
chr8 (71-201)||(7074735-7074865)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 4009152 - 4009357
Alignment:
Q  3 atgtaaaagaaaatcaaaatattttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatcatagataa 102  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  4009152 atgtaaaagaaaatcaaaatactttttaccaaaatgacaaatgttatctaaaattgccaaatatattttaccttgtcgtttttcaatacatcatagataa 4009251  T
Q  103 tatcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatat 202  Q
    ||||||||||||||| | ||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4009252 tatcaggatcccatagttgactgcattttataggatcttcactagattcttaacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatat 4009351  T
Q  203 aacatt 208  Q
     |||||    
T  4009352 tacatt 4009357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 3956456 - 3956251
Alignment:
Q  3 atgtaaaagaaaatcaaaatattttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatcatagataa 102  Q
    |||||||||||||||||||||||||| |||| ||  |||||||||||||||||| ||||||||| || ||||||||| ||||||||||||||||||||||    
T  3956456 atgtaaaagaaaatcaaaatatttttcaccagaaagacaaatgttatctaaaattgccaaatattttttaccttgtcatttttcaatacatcatagataa 3956357  T
Q  103 tatcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatat 202  Q
    |||||||||   ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  3956356 tatcaggattggataatcgactgcattttctagggtcttcactggattcttggcgaacaacctcccgacccatttcttgtagaatgtcatgcatggatat 3956257  T
Q  203 aacatt 208  Q
    ||||||    
T  3956256 aacatt 3956251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 3800762 - 3800949
Alignment:
Q  21 atattttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatcatagataatatcaggatcccataatc 120  Q
    |||||||| |||||||| ||| ||||||||| |||| ||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||      
T  3800762 atatttttaaccaaaataacatatgttatctgaaatagccaaatattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaat 3800861  T
Q  121 gactgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 208  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  3800862 gactgcattttctagggtcttcactatattcttggcgaacaacctcccgacccatttctcatagaatgtcatgcatagatataacatt 3800949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 71 - 204
Target Start/End: Original strand, 4024456 - 4024589
Alignment:
Q  71 taccttgtcgtttttcaatacatcatagataatatcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccga 170  Q
    ||||||||| |||| |||||||||| | ||   |||| |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||    
T  4024456 taccttgtcattttccaatacatcacaaatgtcatcatgatcccataatcgactgcgttttctagggtctgcactagattcttggcgaacaacctcccga 4024555  T
Q  171 cccatttcttgtagaatgtcatgcatagatataa 204  Q
    ||||||||||||||||||||||||||||||||||    
T  4024556 cccatttcttgtagaatgtcatgcatagatataa 4024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 3920716 - 3920507
Alignment:
Q  3 atgtaaaagaaaatcaaaatat----tttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatcatag 98  Q
    ||||||||||||||||||||||    ||||||||||||| || | |||||||| |||  |||| |||   | ||||||||| ||||||||||||||| |     
T  3920716 atgtaaaagaaaatcaaaatatatactttttaccaaaatgactattgttatctgaaaatgccatataatgtttaccttgtcatttttcaatacatcacaa 3920617  T
Q  99 ataatatcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatag 198  Q
    ||   ||||  ||||||||||||||||| ||||  ||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  3920616 atgtcatcaacatcccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctcccgacccatttcttgtagaatgtcatgcatag 3920517  T
Q  199 atataacatt 208  Q
    ||||||||||    
T  3920516 atataacatt 3920507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 3809237 - 3809374
Alignment:
Q  71 taccttgtcgtttttcaatacatcatagataatatcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccga 170  Q
    ||||||||| ||||||||||||||||| ||   |||||||| |||||||||||||| ||||  ||||| ||| ||||||||||| ||||| |||||||||    
T  3809237 taccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctcccga 3809336  T
Q  171 cccatttcttgtagaatgtcatgcatagatataacatt 208  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3809337 cccatttcttgtagaatgtcatgcatagatataacatt 3809374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 3933937 - 3933731
Alignment:
Q  3 atgtaaaagaaaatcaaaatat----tttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatcatag 98  Q
    ||||||||||||||||||||||    ||||||||||||| || | |||||||| |||  |||| |||   | ||||||||| ||||||||||||||| |     
T  3933937 atgtaaaagaaaatcaaaatatatactttttaccaaaatgactattgttatctgaaaatgccatataatgtttaccttgtcatttttcaatacatcaaaa 3933838  T
Q  99 ataatatcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatag 198  Q
    ||   ||||  ||||||||||||||||||||||| | ||||   |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  3933837 atgtcatcaacatcccataatcgactgcattttccaaggtc---actagattcttgccgaacaacctcccaacccatttcttgaagaatgtcatgcatag 3933741  T
Q  199 atataacatt 208  Q
    ||||||||||    
T  3933740 atataacatt 3933731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 4001530 - 4001667
Alignment:
Q  71 taccttgtcgtttttcaatacatcatagataatatcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccga 170  Q
    ||||||||| |||||||||||||   | ||   ||||||||||||||| ||||| | ||| ||||||||||||||||||||||| |||||||||||||||    
T  4001530 taccttgtcatttttcaatacatagcaaatgtcatcaggatcccataaccgacttcgtttactagggtcttcactagattcttggcgaacaacctcccga 4001629  T
Q  171 cccatttcttgtagaatgtcatgcatagatataacatt 208  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  4001630 cccatttcttgtaaaatgtcatgcatagatacaacatt 4001667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 63 - 208
Target Start/End: Original strand, 3986211 - 3986356
Alignment:
Q  63 atatattataccttgtcgtttttcaatacatcatagataatatcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaa 162  Q
    |||| |||||||||||| ||||| || |||||  | ||   |||| |||||||||||||||||| |||  | |||| ||||||||||||||| |||||||    
T  3986211 atattttataccttgtcattttttaagacatcgcaaatttcatcatgatcccataatcgactgcgtttgtttgggtattcactagattcttggcgaacaa 3986310  T
Q  163 cctcccgacccatttcttgtagaatgtcatgcatagatataacatt 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  3986311 cctcccgacccatttcttgaagaatgtcatgcatagatataacatt 3986356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 3816823 - 3816957
Alignment:
Q  71 taccttgtcgtttttcaatacatcatagataatatcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccga 170  Q
    ||||||||| ||||||||||||||||| ||   |||||||| |||||||||||||| ||||| | ||||   |||||||||||| ||||||| ||||| |    
T  3816823 taccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgttttccaaggtc---actagattcttgccgaacaatctcccaa 3816919  T
Q  171 cccatttcttgtagaatgtcatgcatagatataacatt 208  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3816920 cccatttcttgaagaatgtcatgcatagatataacatt 3816957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 4217897 - 4218001
Alignment:
Q  104 atcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatata 203  Q
    ||||||||||||||| |||||   ||| |||||||||| | |||||||| | |||||||||||||||||||| | |||| ||| |||||||||||||||     
T  4217897 atcaggatcccataaccgactttgtttactagggtctttaatagattctaggcgaacaacctcccgacccatcttttgttgaaagtcatgcatagatatt 4217996  T
Q  204 acatt 208  Q
    |||||    
T  4217997 acatt 4218001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 3964164 - 3964030
Alignment:
Q  71 taccttgtcgtttttcaatacatcatagataatatcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccga 170  Q
    ||||||||| ||||| ||||| |||||   ||| |||  ||||||||||||||| |   ||| ||||||| |||| |||||||| ||||||| ||||| |    
T  3964164 taccttgtcattttttaatacttcata---aatgtcatcatcccataatcgactacggcttccagggtctccacttgattcttggcgaacaatctcccta 3964068  T
Q  171 cccatttcttgtagaatgtcatgcatagatataacatt 208  Q
    ||||| ||||||| |||  |||||||||||||||||||    
T  3964067 cccatgtcttgtataattccatgcatagatataacatt 3964030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 4017980 - 4018078
Alignment:
Q  110 atcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataacatt 208  Q
    ||||||||| ||||| ||  ||| ||||||| || | |||||||| |||||||  |||| |||||||||||||| |||||||||||| |||||||||||    
T  4017980 atcccataaccgactacagcttccagggtctccatttgattcttggcgaacaatttccctacccatttcttgtataatgtcatgcatggatataacatt 4018078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 13397107 - 13397308
Alignment:
Q  6 taaaagaaaatcaaaatattttttaccaaaattacaaatgttatctaaaatcgccaaatatattataccttgtcgtttttcaatacatcatagataatat 105  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | || ||||||||| |||||||||||||| ||||||||||    
T  13397107 taaaagaaaatcaaaatattttttaccaaaatgacaaatgttatctaaaattgccaaatttttt-taccttgtcatttttcaatacatcgtagataatat 13397205  T
Q  106 caggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccgacccatttcttgtagaatgtcatgcatagatataac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  13397206 caggatcccataatcgactgcattttctagggtcttcactagattcttggcgaacaacctcgcgacccatttcctgtagaatgtcatgcatagatataac 13397305  T
Q  206 att 208  Q
    |||    
T  13397306 att 13397308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 7074735 - 7074865
Alignment:
Q  71 taccttgtcgtttttcaatacatcatagataatatcaggatcccataatcgactgcattttctagggtcttcactagattcttgacgaacaacctcccga 170  Q
    ||||||||| | ||||||||||| ||| ||   |||||||||| ||| ||| || |  |||| ||| ||||||  ||||||||| ||||||| ||||| |    
T  7074735 taccttgtcatctttcaatacatgataaatgtcatcaggatccaatagtcggcttcggtttccaggttcttcaacagattcttggcgaacaatctcccta 7074834  T
Q  171 cccatttcttgtagaatgtcatgcatagata 201  Q
     |  ||||||||| |||||||||||| ||||    
T  7074835 gctgtttcttgtataatgtcatgcattgata 7074865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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