View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1268_2D_low_29 (Length: 226)

Name: NF1268_2D_low_29
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1268_2D_low_29
NF1268_2D_low_29
[»] chr2 (4 HSPs)
chr2 (1-108)||(41939497-41939604)
chr2 (104-206)||(41939315-41939417)
chr2 (1-106)||(36259877-36259982)
chr2 (108-192)||(36260066-36260150)
[»] chr5 (2 HSPs)
chr5 (1-106)||(22295896-22296001)
chr5 (134-192)||(22296114-22296172)
[»] chr1 (3 HSPs)
chr1 (111-192)||(21035859-21035940)
chr1 (139-193)||(41939756-41939810)
chr1 (1-106)||(21035667-21035772)
[»] chr7 (2 HSPs)
chr7 (111-195)||(36569837-36569921)
chr7 (1-91)||(36570008-36570098)
[»] chr8 (4 HSPs)
chr8 (111-192)||(13516945-13517026)
chr8 (111-192)||(13606478-13606559)
chr8 (1-106)||(13516753-13516858)
chr8 (1-106)||(13606286-13606391)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 41939497 - 41939604
Alignment:
Q  1 aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41939497 aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa 41939596  T
Q  101 ctgtggga 108  Q
    ||||||||    
T  41939597 ctgtggga 41939604  T

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Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 41939417 - 41939315
Alignment:
Q  104 tgggagtcttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatctatatattttgg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41939417 tgggagtcttagcatggctgttggttgtgttcctcttagagattctggtccctttctatattgtgatccatgtccccacatatgcatctatatattttgg 41939318  T
Q  204 aag 206  Q
    |||    
T  41939317 aag 41939315  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 36259982 - 36259877
Alignment:
Q  1 aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa 100  Q
    |||| |||||||| ||||||||||||| |||||||||||| || ||||| ||||  ||||||||||| || | |||||| ||||||||||| || |||||    
T  36259982 aaactcattacaaaagaaagcatggaacaaagccatttatctgcagaaaatgttctaaagcatttgctgttaaaggtgattggagaactcatgaaaaaaa 36259883  T
Q  101 ctgtgg 106  Q
    ||||||    
T  36259882 ctgtgg 36259877  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 36260066 - 36260150
Alignment:
Q  108 agtcttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatct 192  Q
    ||||||||||| |||| ||||||||||||| | || || || ||||| || ||| ||| ||||||||| ||||||||||||||||    
T  36260066 agtcttagcattgctgctggttgtgttcctttaagtgagtctggtcctttcctaaattctgatccatgcccccacatatgcatct 36260150  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 22296001 - 22295896
Alignment:
Q  1 aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa 100  Q
    ||||||| |||||||| |||||||||  ||||||||||  ||||||||||||| | ||| |||||||||| ||||||||||||||||| || ||||||||    
T  22296001 aaacacactacaagaggaagcatggagcaaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaa 22295902  T
Q  101 ctgtgg 106  Q
    ||||||    
T  22295901 ctgtgg 22295896  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 22296114 - 22296172
Alignment:
Q  134 tcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatct 192  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  22296114 tcctcttagagattctggtccttttctgtattgtgatccatgtccccacatatgcatct 22296172  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 21035859 - 21035940
Alignment:
Q  111 cttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatct 192  Q
    ||||||||  ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  21035859 cttagcatacctgttggttgtgtacctcttagagattctggtccttttctgtattgtgatccatgtccccacatatgcatct 21035940  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 41939810 - 41939756
Alignment:
Q  139 ttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatcta 193  Q
    ||||||| || ||||| || |||||||| ||||||||||||||||||||||||||    
T  41939810 ttagagactccggtcctttcctatattgagatccatgtccccacatatgcatcta 41939756  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 21035772 - 21035667
Alignment:
Q  1 aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa 100  Q
    |||||||||| || || || ||||| || ||||| |||||||||||||| ||| | || || ||||| || ||||| || ||||||||||| ||||| ||    
T  21035772 aaacacattataaaaggaaacatgggattaagccttttatgtgtagaaaatgtggtaaggcttttgctgttagaggagattggagaactcatgagaagaa 21035673  T
Q  101 ctgtgg 106  Q
     |||||    
T  21035672 ttgtgg 21035667  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 36569921 - 36569837
Alignment:
Q  111 cttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatctata 195  Q
    ||||||||  ||||||||||||| ||||||||||||||||| || ||||| || ||||||||||| |||||||||||||||||||    
T  36569921 cttagcattcctgttggttgtgtacctcttagagattcaggaccttttctgtactgtgatccatgcccccacatatgcatctata 36569837  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 36570008 - 36570098
Alignment:
Q  1 aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactca 91  Q
    ||||||||||||||||||| |||||||| |||||||| ||||||||||| ||  |||| || ||||| || ||||| || |||||||||||    
T  36570008 aaacacattacaagagaaaacatggaattaagccattcatgtgtagaaaatgcagcaaggcttttgctgttagaggagattggagaactca 36570098  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 13516945 - 13517026
Alignment:
Q  111 cttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatct 192  Q
    |||||||| ||||||||||||| |||| ||||||| || || |||||||| ||||| |||||||||||||||||||||||||    
T  13516945 cttagcattgctgttggttgtgatccttttagagaatctggcccctttctgtattgagatccatgtccccacatatgcatct 13517026  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 13606478 - 13606559
Alignment:
Q  111 cttagcatggctgttggttgtgttcctcttagagattcaggtccctttctatattgtgatccatgtccccacatatgcatct 192  Q
    |||||||| ||||||||||||| |||| ||||||| || || |||||||| ||||| |||||||||||||||||||||||||    
T  13606478 cttagcattgctgttggttgtgatccttttagagaatctggcccctttctgtattgagatccatgtccccacatatgcatct 13606559  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 13516858 - 13516753
Alignment:
Q  1 aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa 100  Q
    |||||||||| |||||||||||||| ||||| || | |||||||||||| ||| ||||| |||||||||| | |||||| |||||||| || ||||| ||    
T  13516858 aaacacattataagagaaagcatggtataaaaccttatatgtgtagaaaatgtggcaaatcatttgcagtgaaaggtgattggagaacacatgagaagaa 13516759  T
Q  101 ctgtgg 106  Q
     |||||    
T  13516758 ttgtgg 13516753  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 13606391 - 13606286
Alignment:
Q  1 aaacacattacaagagaaagcatggaataaagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaa 100  Q
    |||||||||| |||||||||||||| ||||| || | |||||||||||| ||| ||||| |||||||||| | |||||| |||||||| || ||||| ||    
T  13606391 aaacacattataagagaaagcatggtataaaaccttatatgtgtagaaaatgtggcaaatcatttgcagtgaaaggtgattggagaacacatgagaagaa 13606292  T
Q  101 ctgtgg 106  Q
     |||||    
T  13606291 ttgtgg 13606286  T

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