View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_2D_low_32 (Length: 204)
Name: NF1268_2D_low_32
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_2D_low_32 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 5e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 44548404 - 44548212
Alignment:
| Q |
12 |
aagaaagtaaggagaaaagcaagccgagattccaaaagagaggattgatatgttgtcattgaatgcctcatcctactatgtgccaagcttccttaaacac |
111 |
Q |
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| T |
44548404 |
aagaaagtaatgagaaaagcaagccgagattccaaaagagaggattgatatgttgtcattgaatgcctcatcctactatgtgccaaccttccttaaacac |
44548305 |
T |
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| Q |
112 |
cctcattgagtatatcttgtgttagccttcttatacctctttccccttccaagctcttgaggctgagtttgtggagcagccaccacccttcct |
204 |
Q |
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| T |
44548304 |
cctcattgagtatatcttgtgttagccttcttatacctctttccccttccaagctcttgaggctgagtttgtggagcagccaccatccttcct |
44548212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 44547904 - 44547858
Alignment:
| Q |
158 |
ttccaagctcttgaggctgagtttgtggagcagccaccacccttcct |
204 |
Q |
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| T |
44547904 |
ttcctagctcttgaggctgagcttgaggaccagccaccacccttcct |
44547858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 44547661 - 44547612
Alignment:
| Q |
155 |
cccttccaagctcttgaggctgagtttgtggagcagccaccacccttcct |
204 |
Q |
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| T |
44547661 |
cccttcctagcttttgaggctgagcatgtggagcagccatcacccttcct |
44547612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 44548063 - 44548014
Alignment:
| Q |
155 |
cccttccaagctcttgaggctgagtttgtggagcagccaccacccttcct |
204 |
Q |
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| T |
44548063 |
cccttcccagctcttgaggttgagcatgtggagaagccaccacccttcct |
44548014 |
T |
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