View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268_2D_low_6 (Length: 508)
Name: NF1268_2D_low_6
Description: NF1268_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268_2D_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 15 - 498
Target Start/End: Complemental strand, 51727945 - 51727463
Alignment:
| Q |
15 |
actaactaattaactaactaagaagatccaagaagaactaacacaatcaaaatactacacactatagtcgttttagactaacgacacttacattgttaca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51727945 |
actaactaattaactaactaagaagatccaagaagaactaacacaatcaaaatactacaca-tatagtcgttttagactaacgacacttacattgttaca |
51727847 |
T |
|
| Q |
115 |
taactattattggaagccacaatgtgctctataataaagcaactacctacacatcgaaatactaaccaactctaataatcgatcagaaattgaatgagtc |
214 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51727846 |
taactattattggaagctacaatgtgctctataataaagcaactacctacacatcgaaatactaaccaactctaataatcgatcagaaattgaatgagtc |
51727747 |
T |
|
| Q |
215 |
caaaacaatgcagcattcgcaaatgaattgaaaatatacaaacagtaatgtagcttgaggtgcaagttcnnnnnnnatacaaatcttgggtcaagttcnn |
314 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
51727746 |
caaaacaatgcagcatttgcaaatgaattgaaaatatacaaacagtaatgtagcttgaggtgcaagttctttttttatacaaatcttgagtcaagttctt |
51727647 |
T |
|
| Q |
315 |
nnnnnattttgcttcattcttagatagttactggttatgattgttgcttgatactgaatttgttatggtttggaaggtcacacttaatcacacaactgat |
414 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51727646 |
tttttattttgcttcattcttagatagttactggttatgattattgcttgatactgaatttgttatggtttggaaggtcacacttaatcacacaactgat |
51727547 |
T |
|
| Q |
415 |
tgttaatttccgcacaatatccaatatggattgtagtggaacttggcttctgatcttcacttctcatctcggttgtgatgtcca |
498 |
Q |
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| T |
51727546 |
tgttaatttccgcacaatatccaatatagattgtagtggaacttggcttctgatcttcacttctcatctcggttgtgatttcca |
51727463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 51728014 - 51727982
Alignment:
| Q |
15 |
actaactaattaactaactaagaagatccaaga |
47 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
51728014 |
actaactaattaactaactaagaagagccaaga |
51727982 |
T |
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