View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12690_high_1 (Length: 434)

Name: NF12690_high_1
Description: NF12690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12690_high_1
NF12690_high_1
[»] chr4 (36 HSPs)
chr4 (131-419)||(56422858-56423154)
chr4 (229-334)||(31817151-31817257)
chr4 (229-330)||(44855339-44855440)
chr4 (229-334)||(52732686-52732791)
chr4 (229-329)||(21045228-21045328)
chr4 (230-330)||(43421080-43421180)
chr4 (229-334)||(51930671-51930776)
chr4 (230-334)||(54512119-54512223)
chr4 (229-326)||(34360100-34360197)
chr4 (229-330)||(34096111-34096212)
chr4 (229-321)||(50072352-50072438)
chr4 (233-311)||(15501129-15501207)
chr4 (233-311)||(37445759-37445837)
chr4 (229-329)||(32140943-32141043)
chr4 (261-325)||(45903377-45903441)
chr4 (229-324)||(39671068-39671163)
chr4 (36-95)||(56423220-56423279)
chr4 (229-334)||(19849179-19849284)
chr4 (229-330)||(36805406-36805507)
chr4 (233-334)||(45520410-45520511)
chr4 (229-330)||(42672484-42672585)
chr4 (253-330)||(3093467-3093544)
chr4 (261-329)||(51737279-51737347)
chr4 (229-330)||(56556235-56556333)
chr4 (253-334)||(29289840-29289921)
chr4 (229-330)||(34124392-34124493)
chr4 (229-285)||(45889660-45889716)
chr4 (276-330)||(29840197-29840251)
chr4 (229-295)||(35928584-35928650)
chr4 (261-334)||(38761778-38761851)
chr4 (229-270)||(54233913-54233954)
chr4 (254-330)||(17317803-17317879)
chr4 (229-269)||(17499732-17499772)
chr4 (229-285)||(24259708-24259764)
chr4 (270-330)||(30492856-30492916)
chr4 (229-285)||(47321242-47321298)
[»] chr5 (23 HSPs)
chr5 (229-334)||(4967440-4967545)
chr5 (229-330)||(14980004-14980105)
chr5 (229-334)||(31889818-31889923)
chr5 (229-334)||(4011609-4011714)
chr5 (229-330)||(12167563-12167664)
chr5 (229-356)||(36783454-36783589)
chr5 (237-330)||(36660532-36660625)
chr5 (229-330)||(43257813-43257914)
chr5 (229-330)||(166602-166703)
chr5 (253-330)||(15400294-15400372)
chr5 (229-334)||(31557289-31557395)
chr5 (253-331)||(34919858-34919936)
chr5 (229-312)||(39059904-39059987)
chr5 (229-331)||(27652271-27652373)
chr5 (229-325)||(7388150-7388246)
chr5 (35-95)||(42975213-42975272)
chr5 (229-330)||(4751483-4751584)
chr5 (229-330)||(4742219-4742320)
chr5 (268-317)||(33741764-33741813)
chr5 (229-285)||(793602-793658)
chr5 (229-285)||(33822499-33822555)
chr5 (229-285)||(34171262-34171318)
chr5 (229-285)||(42329542-42329598)
[»] chr3 (37 HSPs)
chr3 (229-334)||(26965457-26965562)
chr3 (232-334)||(790174-790276)
chr3 (229-330)||(19552630-19552732)
chr3 (229-334)||(53716104-53716207)
chr3 (229-330)||(647545-647646)
chr3 (229-334)||(37225544-37225649)
chr3 (229-330)||(34059966-34060065)
chr3 (229-328)||(2662447-2662546)
chr3 (229-330)||(2567965-2568066)
chr3 (229-330)||(27483146-27483247)
chr3 (229-323)||(40048973-40049067)
chr3 (229-330)||(44854414-44854513)
chr3 (232-330)||(46362963-46363061)
chr3 (232-327)||(38165617-38165712)
chr3 (229-330)||(25061794-25061893)
chr3 (229-330)||(83394-83495)
chr3 (229-334)||(38457559-38457664)
chr3 (229-356)||(36771504-36771630)
chr3 (229-330)||(44648363-44648465)
chr3 (229-330)||(1340882-1340983)
chr3 (229-330)||(5244684-5244784)
chr3 (229-325)||(35239460-35239556)
chr3 (229-330)||(43580576-43580679)
chr3 (230-311)||(43736842-43736922)
chr3 (229-330)||(27039426-27039526)
chr3 (253-331)||(31290926-31291004)
chr3 (229-307)||(41287177-41287255)
chr3 (229-331)||(54261516-54261618)
chr3 (229-330)||(20512447-20512548)
chr3 (276-331)||(42857043-42857098)
chr3 (288-334)||(50420380-50420426)
chr3 (254-311)||(42791420-42791477)
chr3 (229-285)||(2988606-2988662)
chr3 (233-325)||(22731035-22731126)
chr3 (229-285)||(51381825-51381881)
chr3 (229-285)||(53560765-53560821)
chr3 (229-285)||(54933201-54933257)
[»] chr7 (22 HSPs)
chr7 (229-334)||(41905884-41905989)
chr7 (229-361)||(18886744-18886875)
chr7 (229-323)||(28044101-28044195)
chr7 (229-334)||(34002081-34002187)
chr7 (229-330)||(17869336-17869437)
chr7 (233-329)||(3680877-3680973)
chr7 (229-321)||(34733408-34733500)
chr7 (229-327)||(36447567-36447665)
chr7 (229-330)||(32275294-32275395)
chr7 (229-311)||(42259521-42259603)
chr7 (229-325)||(26527356-26527451)
chr7 (229-330)||(33056237-33056339)
chr7 (229-334)||(1103583-1103688)
chr7 (229-294)||(40207379-40207444)
chr7 (229-330)||(42121641-42121742)
chr7 (229-331)||(26963580-26963682)
chr7 (229-330)||(32345787-32345888)
chr7 (229-334)||(42010524-42010629)
chr7 (229-324)||(22627313-22627408)
chr7 (229-285)||(10684827-10684883)
chr7 (229-285)||(39117486-39117542)
chr7 (270-330)||(40298978-40299038)
[»] chr8 (25 HSPs)
chr8 (229-330)||(7612596-7612696)
chr8 (233-334)||(2067802-2067903)
chr8 (229-329)||(6839305-6839405)
chr8 (232-330)||(27109773-27109872)
chr8 (229-334)||(11335988-11336087)
chr8 (229-311)||(22601233-22601315)
chr8 (229-330)||(38329008-38329108)
chr8 (262-334)||(24732079-24732151)
chr8 (229-311)||(30789033-30789115)
chr8 (229-327)||(36915463-36915561)
chr8 (229-330)||(32326678-32326779)
chr8 (232-334)||(7129378-7129485)
chr8 (229-330)||(45187249-45187350)
chr8 (229-330)||(9022493-9022595)
chr8 (253-327)||(32737887-32737961)
chr8 (229-311)||(41790113-41790195)
chr8 (233-294)||(18666534-18666595)
chr8 (229-269)||(1774085-1774125)
chr8 (229-285)||(8471357-8471413)
chr8 (229-300)||(29931224-29931295)
chr8 (270-323)||(2812915-2812968)
chr8 (271-331)||(3095465-3095525)
chr8 (233-325)||(5588426-5588517)
chr8 (229-285)||(14541744-14541800)
chr8 (229-285)||(34168210-34168266)
[»] chr2 (21 HSPs)
chr2 (229-330)||(4840680-4840781)
chr2 (229-330)||(40410541-40410642)
chr2 (229-325)||(1298738-1298834)
chr2 (229-311)||(4766184-4766266)
chr2 (229-330)||(7743499-7743600)
chr2 (229-330)||(14378201-14378302)
chr2 (229-330)||(34225848-34225949)
chr2 (229-330)||(40987235-40987336)
chr2 (229-322)||(43460871-43460961)
chr2 (229-330)||(24775287-24775388)
chr2 (229-329)||(37106960-37107062)
chr2 (229-326)||(29795156-29795253)
chr2 (229-285)||(16316807-16316863)
chr2 (229-311)||(36360347-36360429)
chr2 (229-308)||(1381837-1381916)
chr2 (232-334)||(11171844-11171946)
chr2 (276-330)||(44228611-44228665)
chr2 (253-334)||(43344172-43344253)
chr2 (229-330)||(43388610-43388711)
chr2 (229-285)||(14698088-14698144)
chr2 (229-285)||(775882-775938)
[»] scaffold0119 (1 HSPs)
scaffold0119 (229-330)||(1641-1742)
[»] chr6 (10 HSPs)
chr6 (229-330)||(26669051-26669152)
chr6 (259-334)||(32258841-32258916)
chr6 (229-323)||(1924634-1924728)
chr6 (229-329)||(23936537-23936638)
chr6 (229-334)||(29927306-29927411)
chr6 (229-311)||(12828653-12828735)
chr6 (232-330)||(29915643-29915742)
chr6 (232-334)||(34439357-34439460)
chr6 (253-334)||(4131897-4131978)
chr6 (229-330)||(31275594-31275695)
[»] chr1 (30 HSPs)
chr1 (229-334)||(52403574-52403679)
chr1 (229-330)||(84471-84572)
chr1 (229-324)||(24040983-24041078)
chr1 (229-330)||(30006228-30006329)
chr1 (232-330)||(1430489-1430588)
chr1 (229-330)||(37437356-37437458)
chr1 (229-323)||(43105562-43105656)
chr1 (229-325)||(5317535-5317632)
chr1 (229-330)||(10690908-10691009)
chr1 (253-330)||(40060859-40060936)
chr1 (237-334)||(43929790-43929887)
chr1 (229-330)||(48259816-48259917)
chr1 (232-332)||(11650159-11650259)
chr1 (232-334)||(1428967-1429070)
chr1 (229-330)||(28751361-28751462)
chr1 (259-334)||(50158267-50158342)
chr1 (229-329)||(50349811-50349917)
chr1 (229-330)||(6332265-6332366)
chr1 (229-312)||(45749470-45749553)
chr1 (229-334)||(2245886-2245991)
chr1 (229-330)||(12002344-12002445)
chr1 (229-334)||(44583870-44583974)
chr1 (229-330)||(48319958-48320055)
chr1 (229-330)||(2459104-2459205)
chr1 (229-285)||(28200220-28200276)
chr1 (229-311)||(17919793-17919874)
chr1 (270-311)||(6377258-6377299)
chr1 (237-286)||(43755134-43755183)
chr1 (229-270)||(44582791-44582832)
chr1 (229-285)||(254909-254965)
[»] scaffold0072 (1 HSPs)
scaffold0072 (229-330)||(12035-12135)
[»] scaffold0194 (1 HSPs)
scaffold0194 (259-330)||(8277-8348)
[»] scaffold0580 (2 HSPs)
scaffold0580 (253-330)||(1696-1773)
scaffold0580 (253-330)||(9435-9512)
[»] scaffold0886 (1 HSPs)
scaffold0886 (252-334)||(4057-4139)
[»] scaffold0238 (1 HSPs)
scaffold0238 (229-334)||(15989-16093)
[»] scaffold0047 (1 HSPs)
scaffold0047 (229-285)||(70451-70507)
[»] scaffold0189 (1 HSPs)
scaffold0189 (276-330)||(13021-13075)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 131 - 419
Target Start/End: Complemental strand, 56423154 - 56422858
Alignment:
Q  131 tatttttgaattgagagtgtgagaaatatcagctataaatggtttatttattcatattttgtaggtttggctttgacgaaataatatcactccctccgtt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||| ||    
T  56423154 tatttttgaattgagagtgtgagaaatatcagctataaatggtttatttattcatattttgtaggtttggctttgacgaaataatactacttcctccatt 56423055  T
Q  231 tcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    ||||||||| ||||||||||| ||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56423054 tcaatgcaattttaatttcgtctttttcttataaagtaaagacagtttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 56422955  T
Q  331 tc--------aagcgatactcattttgaaacggatggaggagaaaatatattaaaggaaaagggagatggggtgtaaatgtaaaaggtgtggtgcag 419  Q
    ||        |||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56422954 tcaaagcctaaagcgacactcattttgaaacggagagaggagaaaatatattaaaggaaaagggagatggggtgtaaatgtaaaaggtgtggtgcag 56422858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 31817257 - 31817151
Alignment:
Q  229 tttcaatgcaactttaatttcgtattttt-cttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||| |||||||||| |||    
T  31817257 tttcaatgcaactttaattttgtattttttcttataaagtaagggaagtttagtaaaaacgttatatccaatgattatttcattccatttcttaatttgt 31817158  T
Q  328 gtgtcaa 334  Q
    |||||||    
T  31817157 gtgtcaa 31817151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 44855339 - 44855440
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||||    
T  44855339 tttcaatgcaactttaattttgtcttttccttataaagtaagggcagtttagtaaaagcgttatattcaatgattatttcattctatttcttaatttgtg 44855438  T
Q  329 tg 330  Q
    ||    
T  44855439 tg 44855440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 52732686 - 52732791
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||| ||    
T  52732686 tttcaatgcaactttaattttgtcttttccttataaagtaagggcagtttagtaaaagtgttatatccaatgattatttcattccattttttaatctatg 52732785  T
Q  329 tgtcaa 334  Q
    ||||||    
T  52732786 tgtcaa 52732791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 21045228 - 21045328
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| ||| |||||||||||    
T  21045228 tttcaatgcaactttaattttgtctttttcttataaagtaagggcagtttaataaaagccttatatccaatgattatttcattccattccttaatctgtg 21045327  T
Q  329 t 329  Q
    |    
T  21045328 t 21045328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 43421180 - 43421080
Alignment:
Q  230 ttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgt 329  Q
    ||||||||||||||||||| || |||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||| |||||||||| |||||    
T  43421180 ttcaatgcaactttaattttgtctttttcttataaagtaagagcaatttagtaaaagtattatatccaatgattatttcattccatttcttaatttgtgt 43421081  T
Q  330 g 330  Q
    |    
T  43421080 g 43421080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 51930671 - 51930776
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| |||| |||     
T  51930671 tttcaatgcaactttaattttgtcattttcttataaagtaagggcagtttagtaaaagcgttatatccaattattatttcattccatttcataatttgta 51930770  T
Q  329 tgtcaa 334  Q
    ||||||    
T  51930771 tgtcaa 51930776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 334
Target Start/End: Original strand, 54512119 - 54512223
Alignment:
Q  230 ttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgt 329  Q
    ||||||||||||||||||| ||  ||||||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||  |||||||||| |||||    
T  54512119 ttcaatgcaactttaattttgtcattttcttataaagtaagagcagtttagtaaaaacgttatatccaattattatttcatttcatttcttaatatgtgt 54512218  T
Q  330 gtcaa 334  Q
    |||||    
T  54512219 gtcaa 54512223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 34360100 - 34360197
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctg 326  Q
    ||||||||||||||||| || || |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||  ||| |||||||||    
T  34360100 tttcaatgcaactttaagtttgtctttttcttataaagtaagggcagtttagtaaaagtgttatatctaatgattatttcatttcattccttaatctg 34360197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 34096111 - 34096212
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||| |||||||| || || |||||||||||||||||||||||||||||||||| ||||  || |||||||||||||||  |||| ||||| ||||    
T  34096111 tttcaatgaaactttaagtttgtctttttcttataaagtaagggcaatttagtaaaagtgttaagtctaatgattatttcatttcattttttaatttgtg 34096210  T
Q  329 tg 330  Q
    ||    
T  34096211 tg 34096212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 50072352 - 50072438
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttctta 321  Q
    |||||||||||||||||||| ||      ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||    
T  50072352 tttcaatgcaactttaattttgt------cttataaagtaagggcagtttagtaaaaacgttatatccaatgattatttcattccatttctta 50072438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 15501207 - 15501129
Alignment:
Q  233 aatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    ||||||||||||| || ||||||||||||||||||||||||| ||||||||||  ||||| || |||||||||||||||    
T  15501207 aatgcaactttaagtttgtatttttcttataaagtaagggcagtttagtaaaaatgttatgtctaatgattatttcatt 15501129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 37445759 - 37445837
Alignment:
Q  233 aatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    ||||||||||||| || || |||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||    
T  37445759 aatgcaactttaaatttgtctttttcttataaagtaagggcagtttagtaaaagtgttatgtctaatgattatttcatt 37445837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 32141043 - 32140943
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||| ||||  || || ||||  |||||||||| ||||| ||||||||||| ||||| || |||||||||||||||| |||||||||||||||    
T  32141043 tttcaatgcaaatttatgtttgtcttttgtttataaagtaggggcagtttagtaaaagtgttatgtctaatgattatttcattcaatttcttaatctgtg 32140944  T
Q  329 t 329  Q
    |    
T  32140943 t 32140943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 45903441 - 45903377
Alignment:
Q  261 ataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatct 325  Q
    |||||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  45903441 ataaagtaagagcagtttaataaaagcgttatatccaatgattatttcattctatttcttaatct 45903377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 324
Target Start/End: Complemental strand, 39671163 - 39671068
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatc 324  Q
    ||||||||||||||||| || || ||||||||||||||||| || | ||||||||| | ||||| || |||||| ||||||||| |||||||||||    
T  39671163 tttcaatgcaactttaagtttgtttttttcttataaagtaaaggtagtttagtaaatgtgttatgtctaatgataatttcattccatttcttaatc 39671068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 56423279 - 56423220
Alignment:
Q  36 aagagatattgtcttataagtggtttattttaattatttgttgaactatatgaaatctat 95  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  56423279 aagagatatcgtcttgtaagtagtttattttaattatttgttgaactatatgaaatctat 56423220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 19849179 - 19849284
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || ||||||||||||||| |||||| ||||||||||  |||||||  ||| ||||||| |||  |||||||||| || |    
T  19849179 tttcaatgcaactttaagtttgtttttttcttataaagtgagggcagtttagtaaaaatgttatatgtaataattattttatttcatttcttaatatgcg 19849278  T
Q  329 tgtcaa 334  Q
    ||||||    
T  19849279 tgtcaa 19849284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 36805507 - 36805406
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||| ||||||||| || || |||||| |||||| ||||| || ||||||||||| ||||| || |||||||||||||||  ||| |||||||||||    
T  36805507 tttcaatacaactttaagtttgtctttttcatataaactaaggacagtttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgtg 36805408  T
Q  329 tg 330  Q
    ||    
T  36805407 tg 36805406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 45520511 - 45520410
Alignment:
Q  233 aatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtc 332  Q
    ||||||||||||| || || || ||||||||| |||||||||  |||||||||| ||||| || ||||||||||| |||| |||||||||||| || |||    
T  45520511 aatgcaactttaagtttgtcttattcttataatgtaagggcagcttagtaaaagtgttatgtctaatgattattttattccatttcttaatctatgcgtc 45520412  T
Q  333 aa 334  Q
    ||    
T  45520411 aa 45520410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 42672484 - 42672585
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||| ||||||||| || || |||||||||||||||| | | | ||||||||||| ||||| || |||||||||||||||  ||| |||||| ||||    
T  42672484 tttcaatacaactttaaatttgtctttttcttataaagtatgagtagtttagtaaaagtgttatgtctaatgattatttcattatattccttaatttgtg 42672583  T
Q  329 tg 330  Q
    ||    
T  42672584 tg 42672585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 3093467 - 3093544
Alignment:
Q  253 tttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    |||||||||||||| |||| ||||||| | |||| ||||| || ||||||||||| |||| |||||||||||| ||||    
T  3093467 tttttcttataaaggaaggacaatttaatgaaagtgttatgtctaatgattattttattcaatttcttaatctatgtg 3093544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 51737347 - 51737279
Alignment:
Q  261 ataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgt 329  Q
    |||||||||||| ||||||||||||| ||||| || ||| |||||||||||| ||| |||||| |||||    
T  51737347 ataaagtaagggtaatttagtaaaagtgttatgtctaattattatttcattctattccttaatttgtgt 51737279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 56556333 - 56556235
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||| ||  |||| || ||||||||||||||||| ||||  ||||||||||||| ||||| || ||||   ||||||||| ||| |||||||||||    
T  56556333 tttcaatgtaatgttaagtttgtatttttcttataaagcaaggataatttagtaaaagtgttatgtctaatg---atttcattcaattccttaatctgtg 56556237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 29289921 - 29289840
Alignment:
Q  253 tttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaa 334  Q
    ||||| ||||||||||| ||| ||||| |||||   |||| || |||||||||||||||| ||||||||| || ||||||||    
T  29289921 ttttttttataaagtaaaggcgatttattaaaaatattatgtctaatgattatttcattccatttcttaacctatgtgtcaa 29289840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 34124392 - 34124493
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||| ||||||||| || ||||||||||||||||||||||  | ||||||||||  |||||  |   ||| || || |||| |||||||||||||||    
T  34124392 tttcaatacaactttaagtttgtatttttcttataaagtaaggttattttagtaaaattgttatgacatttgactactttattcaatttcttaatctgtg 34124491  T
Q  329 tg 330  Q
    ||    
T  34124492 tg 34124493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 45889660 - 45889716
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || |||||||||||||||||||  | ||||||||||    
T  45889660 tttcaatgcaactttaagtttgtttttttcttataaagtaaggttattttagtaaaa 45889716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 29840197 - 29840251
Alignment:
Q  276 tttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    ||||||||||| ||||| || |||||||||||||||| ||| |||||| ||||||    
T  29840197 tttagtaaaagtgttatgtctaatgattatttcattccattccttaatttgtgtg 29840251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 35928584 - 35928650
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatc 295  Q
    ||||||||||| ||||| ||  | ||||||||||||||| | |||||||||||||||| | ||||||    
T  35928584 tttcaatgcaattttaagtttatctttttcttataaagtcatggcaatttagtaaaagtgatatatc 35928650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 38761851 - 38761778
Alignment:
Q  261 ataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaa 334  Q
    ||||||||||||  |||||||||||| ||||| || | | ||||||| |||| |||||||||||  ||||||||    
T  38761851 ataaagtaagggtgatttagtaaaagtgttatgtctattaattatttaattctatttcttaatccatgtgtcaa 38761778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 54233913 - 54233954
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaag 270  Q
    ||||||||||||||||| || || ||||||||||||||||||    
T  54233913 tttcaatgcaactttaagtttgtctttttcttataaagtaag 54233954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 17317879 - 17317803
Alignment:
Q  254 ttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    ||||||||||||||||| | | ||||||||||| |  || || ||||||||||| |||  |||| ||||||||||||    
T  17317879 ttttcttataaagtaagcgtagtttagtaaaagagcaatgtctaatgattattttattttattttttaatctgtgtg 17317803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 17499772 - 17499732
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaa 269  Q
    ||||||||||||||||| || || |||||||||||||||||    
T  17499772 tttcaatgcaactttaagtttgtctttttcttataaagtaa 17499732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 24259708 - 24259764
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || ||  ||||||||||||||||||  | ||||||||||    
T  24259708 tttcaatgcaactttaagtttgtcattttcttataaagtaaggttattttagtaaaa 24259764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 30492856 - 30492916
Alignment:
Q  270 gggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    ||||| || |||||||| ||||| || |||||||||||||||| ||| |||||| ||||||    
T  30492856 gggcagttcagtaaaagtgttatgtctaatgattatttcattccattccttaatttgtgtg 30492916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 47321242 - 47321298
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    |||||||||||||||||  | || |||||||||||||||||||  | ||||||||||    
T  47321242 tttcaatgcaactttaaggttgtctttttcttataaagtaaggttattttagtaaaa 47321298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 4967545 - 4967440
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4967545 tttcaatgcaactttaattttgtcttttttttataaagtaagggcagtttagtaaaagcgttatatccaatgattatttcattccatttcttaatctgtg 4967446  T
Q  329 tgtcaa 334  Q
    ||||||    
T  4967445 tgtcaa 4967440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 14980105 - 14980004
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  14980105 tttcaatgcaactttaattttgtctttttcttataaagtaagggcagtttggtaaaagtgttatatccaatgattatttcattccatttcttaatctgtg 14980006  T
Q  329 tg 330  Q
    ||    
T  14980005 tg 14980004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 31889818 - 31889923
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||||||||||||||||||||| |||||| ||| |||||||| |||| |||||||||||| |||||||||||||||    
T  31889818 tttcaatgcaactttaattttgtctttttcttataaagtaagggcagtttagtgaaaacgttatattcaataattatttcattccatttcttaatctgtg 31889917  T
Q  329 tgtcaa 334  Q
    ||||||    
T  31889918 tgtcaa 31889923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 4011714 - 4011609
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||||||  | ||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||| |||| |||||||||||| ||    
T  4011714 tttcaatgcaactttaattttatctttttcttataaaataagggcattttagaaaaaacgttatatccaatgattatttgattccatttcttaatctatg 4011615  T
Q  329 tgtcaa 334  Q
    ||||||    
T  4011614 tgtcaa 4011609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 12167664 - 12167563
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || |   ||||||||||||||||||||| ||||||||||| ||| | || |||||||||||||||| |||||||||| ||||    
T  12167664 tttcaatgcaactttaagtttgaccttttcttataaagtaagggcagtttagtaaaagtgttttgtctaatgattatttcattcaatttcttaatttgtg 12167565  T
Q  329 tg 330  Q
    ||    
T  12167564 tg 12167563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 356
Target Start/End: Original strand, 36783454 - 36783589
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||| ||  ||||||||||||||||||||||  ||||| || |||||||||||||||  || ||||||||||||    
T  36783454 tttcaatgcaactttaaatttgtctttttcataacaagtaagggcaatttagtaaaaatgttatgtctaatgattatttcatttcatctcttaatctgtg 36783553  T
Q  329 tg--------tcaagcgatactcattttgaaacgga 356  Q
    ||        | ||||||||||||||||||||||||    
T  36783554 tgcaattggctaaagcgatactcattttgaaacgga 36783589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 36660532 - 36660625
Alignment:
Q  237 caactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    ||||||||| || || ||||||||||||||||||| || ||||||||||| ||||| || |||||||||||||||  ||| |||||||||||||    
T  36660532 caactttaagtttgtctttttcttataaagtaaggacattttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgtgtg 36660625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 43257914 - 43257813
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || | |||||||||||||||||||| ||||||| ||| ||||| || |||||||||||||||  |||  ||||||||||    
T  43257914 tttcaatgcaactttaagtttgtctatttcttataaagtaagggcagtttagtataagtgttatgtctaatgattatttcatttcattctttaatctgtg 43257815  T
Q  329 tg 330  Q
    ||    
T  43257814 tg 43257813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 166703 - 166602
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||| |||||   ||||||| ||||||||||| ||||| || |||||||||||||||  ||| |||||||||||    
T  166703 tttcaatgcaactttaagtttgtctttttcatataatacaagggcagtttagtaaaagtgttatttctaatgattatttcatttcattccttaatctgtg 166604  T
Q  329 tg 330  Q
    ||    
T  166603 tg 166602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 15400294 - 15400372
Alignment:
Q  253 tttttcttataaagtaagggcaattt-agtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    ||||||||||||||||| || ||||| |||||||| |||||||| ||| |||||||||||| |||| ||||||||||||    
T  15400294 tttttcttataaagtaaagggaattttagtaaaagtgttatatctaataattatttcattcaattttttaatctgtgtg 15400372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 31557395 - 31557289
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagt-aagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    ||||||||||||||||| || || ||||||||||||||| |||||   |||| ||||||  ||||||  |||||||||||||||| |||||||||| |||    
T  31557395 tttcaatgcaactttaagtttgtctttttcttataaagtaaagggttgtttactaaaagtattatatttaatgattatttcattctatttcttaatatgt 31557296  T
Q  328 gtgtcaa 334  Q
    || ||||    
T  31557295 gtatcaa 31557289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 34919858 - 34919936
Alignment:
Q  253 tttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgt 331  Q
    |||||||||||||||||||||| ||||||||||  | ||| |||||||||||||| |||  ||| ||||||||||||||    
T  34919858 tttttcttataaagtaagggcagtttagtaaaattgctatgtccaatgattattttatttcattccttaatctgtgtgt 34919936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 312
Target Start/End: Original strand, 39059904 - 39059987
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattc 312  Q
    ||||||||||||||||| || || |||||| ||||||  ||||| | ||||||||||| ||||| || ||||||||||||||||    
T  39059904 tttcaatgcaactttaagtttgtttttttcatataaaacaagggtagtttagtaaaagtgttatgtctaatgattatttcattc 39059987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 27652373 - 27652271
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||||||||||||||||  | ||||||||||  |||||  |   ||| ||||| |||| |||||||||||||||    
T  27652373 tttcaatgcaactttaaatttgtctttttcttataaagtaaggttattttagtaaaattgttatgacatttgactattttattccatttcttaatctgtg 27652274  T
Q  329 tgt 331  Q
    |||    
T  27652273 tgt 27652271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 7388246 - 7388150
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatct 325  Q
    ||||||||||||||||| ||  | ||||||||||||| ||||| |||||||||||||   |||| || ||||||||||| |||  |||| |||||||    
T  7388246 tttcaatgcaactttaaatttatctttttcttataaaataaggacaatttagtaaaaatattatgtctaatgattattttatttcatttattaatct 7388150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 42975272 - 42975213
Alignment:
Q  35 aaagagatattgtcttataagtggtttattttaattatttgttgaactatatgaaatctat 95  Q
    |||||||||||||||| ||| |||||| ||||| ||||||||||||| |||||||||||||    
T  42975272 aaagagatattgtcttgtaaatggttt-ttttacttatttgttgaaccatatgaaatctat 42975213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 4751584 - 4751483
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||| ||||||||| || || |||||| ||||||  |||||   ||||||||||| ||||| || |||||||||||||||  ||| |||||| ||||    
T  4751584 tttcaattcaactttaagtttgtttttttcatataaaacaagggttgtttagtaaaagtgttatgtctaatgattatttcatttcattccttaatatgtg 4751485  T
Q  329 tg 330  Q
    ||    
T  4751484 tg 4751483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 4742320 - 4742219
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||| ||||||||| || || |||||| ||||||  |||||   ||||||||||| ||||| ||  ||||||||||||||  ||| |||||| ||||    
T  4742320 tttcaattcaactttaagtttgtttttttcatataaaacaagggttgtttagtaaaagtgttatgtctgatgattatttcatttcattccttaatatgtg 4742221  T
Q  329 tg 330  Q
    ||    
T  4742220 tg 4742219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 33741764 - 33741813
Alignment:
Q  268 aagggcaatttagtaaaagcgttatatccaatgattatttcattcgattt 317  Q
    ||||||||||||||||||  | |||||| |||||||||||||||| ||||    
T  33741764 aagggcaatttagtaaaaatggtatatctaatgattatttcattccattt 33741813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 793658 - 793602
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || || ||||||||||||||||  | ||||||||||    
T  793658 tttcaatgcaactttaagtttgtcttgttcttataaagtaaggttattttagtaaaa 793602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 33822555 - 33822499
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || || ||||||||||||||||  | ||||||||||    
T  33822555 tttcaatgcaactttaagtttgtcttgttcttataaagtaaggttattttagtaaaa 33822499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 34171262 - 34171318
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || || ||||||||||||||||  | ||||||||||    
T  34171262 tttcaatgcaactttaagtttgtcttgttcttataaagtaaggttattttagtaaaa 34171318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 42329598 - 42329542
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || || ||||||||||||||||  | ||||||||||    
T  42329598 tttcaatgcaactttaagtttgtcttattcttataaagtaaggttattttagtaaaa 42329542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 26965562 - 26965457
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  26965562 tttcaatgcaactttaattttgtctttttcttataaagtaagggcagtttagtaaaagcgttatatccaatgattatttcattttatttcttaatctgtg 26965463  T
Q  329 tgtcaa 334  Q
    ||||||    
T  26965462 tgtcaa 26965457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 790174 - 790276
Alignment:
Q  232 caatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgt 331  Q
    ||||||||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||  |||||||||| |||||||    
T  790174 caatgcaactttaattttgactttttcttataaagtaagggcagtttagtaaaagcgttatattcaatgattatttcattacatttcttaatatgtgtgt 790273  T
Q  332 caa 334  Q
    |||    
T  790274 caa 790276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 19552630 - 19552732
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagt-aaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    |||||||||||||||||||| |||||||||||||||||||||| || |||||| |||| |||||||||||||||||||||||||  |||||||||| |||    
T  19552630 tttcaatgcaactttaattttgtatttttcttataaagtaaggacagtttagtaaaaaacgttatatccaatgattatttcatttcatttcttaatttgt 19552729  T
Q  328 gtg 330  Q
    |||    
T  19552730 gtg 19552732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 53716104 - 53716207
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||  || |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||  |||||||||| | ||    
T  53716104 tttcaatgcaactttaatt--gtctttttcttataaagtaagagcagtttagtaaaagcgttatatccaatgattatttcatttcatttcttaatttatg 53716201  T
Q  329 tgtcaa 334  Q
    ||||||    
T  53716202 tgtcaa 53716207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 647646 - 647545
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||||||||||||||||||| ||||||||||  |||||||| |||||||||||||||  |||||||||||||||    
T  647646 tttcaatgcaactttaagtttgtctttttcttataaagtaagggcagtttagtaaaactgttatatctaatgattatttcatttcatttcttaatctgtg 647547  T
Q  329 tg 330  Q
    ||    
T  647546 tg 647545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 37225649 - 37225544
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || ||||||||||||||||||| || |||||||||||  |||||||||||||||||||||||  |||||||||||| |     
T  37225649 tttcaatgcaactttaattttgtctttttcttataaagtaaggacagtttagtaaaagtattatatccaatgattatttcattgtatttcttaatctata 37225550  T
Q  329 tgtcaa 334  Q
    ||||||    
T  37225549 tgtcaa 37225544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 34059966 - 34060065
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||  || |||||||||||||||||||| | |||||||||| | ||||||||||| |||||||||||| |||||||||||||||    
T  34059966 tttcaatgcaactttaatt--gtctttttcttataaagtaagggtagtttagtaaaaactttatatccaattattatttcattccatttcttaatctgtg 34060063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 2662546 - 2662447
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || ||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||| ||||  ||||||||||    
T  2662546 tttcaatgcaactttaaatttgtctttttcttataaaataagggcaatttagtaaaagtgttatgtctaatgattatttcatttgattctttaatctgtg 2662447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 2568066 - 2567965
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || ||||||||||||||||||| || ||| ||||||| |||||||| |||||||||||||||| ||| |||||||| ||    
T  2568066 tttcaatgcaactttaagtttgtctttttcttataaagtaaggacatttttgtaaaagtgttatatctaatgattatttcattcaattccttaatctatg 2567967  T
Q  329 tg 330  Q
    ||    
T  2567966 tg 2567965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 27483247 - 27483146
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||||  ||| |||||| ||||    
T  27483247 tttcaatgcaactttaagtttgtctttttcttataaagtaagggaaatttagtaaaagtgttatgtctaatgattatttcatttcattccttaatttgtg 27483148  T
Q  329 tg 330  Q
    ||    
T  27483147 tg 27483146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 40048973 - 40049067
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaat 323  Q
    ||||||||||||||||| || || ||||||||||||||||| ||||||||| |||||| ||||| || |||||||||||||||| ||| ||||||    
T  40048973 tttcaatgcaactttaaatttgtctttttcttataaagtaaaggcaatttaataaaagtgttatgtctaatgattatttcattccattccttaat 40049067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 44854414 - 44854513
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| ||  | || |||||||||||||||| |||  ||||||| ||    
T  44854414 tttcaatgcaactttaagtttgtatttttcttataaagtaagggcagtttagtaaaagtgt--tgtctaatgattatttcattcaattcattaatctatg 44854511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 46363061 - 46362963
Alignment:
Q  232 caatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    |||||||||||||| || |||||||||||||||||||||| || ||||||||||  ||||  || |||||||||||||||| ||| |||||| ||||||    
T  46363061 caatgcaactttaaatttgtatttttcttataaagtaaggacagtttagtaaaaatgttaggtctaatgattatttcattcaattccttaatatgtgtg 46362963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 38165712 - 38165617
Alignment:
Q  232 caatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    |||||||||||||| || || ||||||||||||||||||| || ||||||||||| ||||| |  |||||||||||||||  ||| ||||||||||    
T  38165712 caatgcaactttaagtttgtctttttcttataaagtaaggacagtttagtaaaagtgttatgtttaatgattatttcattacattccttaatctgt 38165617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 25061794 - 25061893
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || ||  ||||||||||||||||||| | ||||||||||| ||||| || |||||||||||||||  ||| |||||| ||||    
T  25061794 tttcaatgcaactttaagtttgt--ttttcttataaagtaagggtagtttagtaaaagtgttatgtctaatgattatttcatttcattccttaatatgtg 25061891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 83394 - 83495
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||||||||||||||||| | ||||||||||| ||| | || |||||||| ||||||  ||| |||||| ||||    
T  83394 tttcaatgcaactttaagtttgtctttttcttataaagtaagggtagtttagtaaaagtgttgtgtctaatgattaattcatttcattccttaatttgtg 83493  T
Q  329 tg 330  Q
    ||    
T  83494 tg 83495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 38457559 - 38457664
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||| ||||| ||  | ||||||| ||||||||| |||| ||||||||||| ||||| |  |||||||||||||||| |||||||||| ||||    
T  38457559 tttcaatgcaattttaagtttatctttttctaataaagtaatggcagtttagtaaaagtgttatgtgtaatgattatttcattcaatttcttaatttgtg 38457658  T
Q  329 tgtcaa 334  Q
    | ||||    
T  38457659 tctcaa 38457664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 229 - 356
Target Start/End: Complemental strand, 36771630 - 36771504
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || ||||||||||||| |||| ||| ||||||||||   |||| || ||| |||||||||||  |||||||||| ||||    
T  36771630 tttcaatgcaactttaagtttgtctttttcttataaaataagagcagtttagtaaaaatattatgtctaataattatttcattatatttcttaatatgtg 36771531  T
Q  329 tgtcaagcgatactcattttgaaacgga 356  Q
    || ||   |||| |||||||||||||||    
T  36771530 tg-cagttgatattcattttgaaacgga 36771504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 44648465 - 44648363
Alignment:
Q  229 tttcaatgcaactttaatttcgtattttt-cttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    ||||||| ||||||||| || || ||||| || ||||||||| |||| ||||||||||| ||||| || |||||||||||||||  ||| ||||||||||    
T  44648465 tttcaattcaactttaagtttgtcttttttctcataaagtaaaggcagtttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgt 44648366  T
Q  328 gtg 330  Q
    |||    
T  44648365 gtg 44648363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 1340983 - 1340882
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || ||||||||||||||||| | || ||||| ||||| ||||| || ||| |||||||||||| |||  ||||||| ||    
T  1340983 tttcaatgcaactttaagtttgtctttttcttataaagtaaagacactttagaaaaagtgttatgtctaattattatttcattccattctttaatctatg 1340884  T
Q  329 tg 330  Q
    ||    
T  1340883 tg 1340882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 5244684 - 5244784
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||||||||| |||| |  | |||| |||||| ||||| || |||||||||||||||| |||||||||| ||||    
T  5244684 tttcaatgcaactttaagtttgtttttttcttataa-gtaaagagactttaataaaagtgttatgtctaatgattatttcattcaatttcttaatatgtg 5244782  T
Q  329 tg 330  Q
    ||    
T  5244783 tg 5244784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 325
Target Start/End: Original strand, 35239460 - 35239556
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatct 325  Q
    ||||| ||||||||||| || || ||||||||||||||||||| || ||||||||||  |||||  | ||||||||||| |||| |||| |||||||    
T  35239460 tttcactgcaactttaagtttgtctttttcttataaagtaaggacagtttagtaaaaatgttatgcctaatgattattttattcaattttttaatct 35239556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 43580576 - 43580679
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttata--aagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctg 326  Q
    ||||||||||||||||| || || |||||| ||||  ||  ||||||| ||||||||||  |||||||  |||||||||||||||| ||| |||||||||    
T  43580576 tttcaatgcaactttaaatttgtctttttcatatataaaacaagggcagtttagtaaaaatgttatatgtaatgattatttcattctattccttaatctg 43580675  T
Q  327 tgtg 330  Q
    ||||    
T  43580676 tgtg 43580679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 43736922 - 43736842
Alignment:
Q  230 ttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    |||||||||||||||| ||  | ||||||||||||| |||| | | ||||||||||| |||||||| |||||||||||||||    
T  43736922 ttcaatgcaactttaagttt-tctttttcttataaaataagagtagtttagtaaaagtgttatatctaatgattatttcatt 43736842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 27039426 - 27039526
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttctt-ataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    ||||||||||||||||| || || ||||| || ||||||||||| || ||||||||||| |||||||  ||||||  |||||||| ||| |||||| |||    
T  27039426 tttcaatgcaactttaaatttgtctttttttttataaagtaaggacactttagtaaaagtgttatatttaatgat--tttcattccattacttaatatgt 27039523  T
Q  328 gtg 330  Q
    |||    
T  27039524 gtg 27039526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 31291004 - 31290926
Alignment:
Q  253 tttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgt 331  Q
    ||||||| ||||| ||| |||| ||||||||||| ||||| || ||| |||||||||||  ||| ||||||||||||||    
T  31291004 tttttctaataaaataaaggcagtttagtaaaagtgttatgtctaataattatttcatttcattccttaatctgtgtgt 31290926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 41287177 - 41287255
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattattt 307  Q
    ||||||||||||||||| || |  |||||| |||||| |||| ||| ||||||||||| ||||| || |||||||||||    
T  41287177 tttcaatgcaactttaagtttgagtttttcatataaaataagtgcagtttagtaaaagtgttatgtctaatgattattt 41287255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 54261516 - 54261618
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||| ||||||||| || ||||||||||||||||||||||  | ||||||||||  |||||  |   ||| || || |||| |||||||||||||||    
T  54261516 tttcaatacaactttaagtttgtatttttcttataaagtaaggttattttagtaaaattgttatgacatttgactactttattcaatttcttaatctgtg 54261615  T
Q  329 tgt 331  Q
    |||    
T  54261616 tgt 54261618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 20512548 - 20512447
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||| ||||||||| || ||||||||||||||||||||||  | ||||||||||  | |||  |   ||| ||||| |||| |||||||||||||||    
T  20512548 tttcaatacaactttaagtttgtatttttcttataaagtaaggttattttagtaaaattgctatgacatttgactattttattcaatttcttaatctgtg 20512449  T
Q  329 tg 330  Q
    ||    
T  20512448 tg 20512447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 42857098 - 42857043
Alignment:
Q  276 tttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgt 331  Q
    ||||||||||  ||||| || ||||||||||||||| |||| ||||||||||||||    
T  42857098 tttagtaaaaatgttatgtctaatgattatttcatttgattccttaatctgtgtgt 42857043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 50420380 - 50420426
Alignment:
Q  288 gttatatccaatgattatttcattcgatttcttaatctgtgtgtcaa 334  Q
    ||||| || |||||||||||||||| |||| ||||||||||||||||    
T  50420380 gttatgtcaaatgattatttcattctattttttaatctgtgtgtcaa 50420426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 42791420 - 42791477
Alignment:
Q  254 ttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    |||| |||| ||||||||| |||||||||||||  |||| || |||||||||||||||    
T  42791420 tttttttatgaagtaagggtaatttagtaaaagtattatgtctaatgattatttcatt 42791477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 2988662 - 2988606
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || || ||||||||||||||||  | ||||||||||    
T  2988662 tttcaatgcaactttaagtttgtcttgttcttataaagtaaggttattttagtaaaa 2988606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 22731035 - 22731126
Alignment:
Q  233 aatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatct 325  Q
    |||| |||||||| || || ||||||||||||| | ||| || ||||||||||  ||||| |  |||||||||||||||  ||||||||||||    
T  22731035 aatgtaactttaagtttgtctttttcttataaattgagg-cagtttagtaaaaatgttatgtttaatgattatttcattatatttcttaatct 22731126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 51381825 - 51381881
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || ||||| |||||||||||||  | ||||||||||    
T  51381825 tttcaatgcaactttaagtttgtctttttattataaagtaaggttattttagtaaaa 51381881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 53560765 - 53560821
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    |||||||||||||||||  | || |||||||||||||||||||  | ||||||||||    
T  53560765 tttcaatgcaactttaagattgtctttttcttataaagtaaggttattttagtaaaa 53560821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 54933257 - 54933201
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || ||  ||||||||||||||||||  | ||||||||||    
T  54933257 tttcaatgcaactttaagtttgtcattttcttataaagtaaggttattttagtaaaa 54933201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 41905989 - 41905884
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  41905989 tttcaatgcaactttaattttgtctttttcttataaagtaagggcagtttagtaaaagcgttatatccaatgattatttcagttcatttcttaatctgtg 41905890  T
Q  329 tgtcaa 334  Q
    ||||||    
T  41905889 tgtcaa 41905884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 229 - 361
Target Start/End: Original strand, 18886744 - 18886875
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  18886744 tttcaatgcaactttaattttgtcttttccttataaagtaagggcagtttagtaaaagcgttatatctaatgattatttcattccatttcttagtctgtg 18886843  T
Q  329 tgtcaagcgatactcattttgaaacggatggag 361  Q
    || ||| ||| ||||||||| ||||||| ||||    
T  18886844 tgccaa-cgacactcattttaaaacggagggag 18886875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 28044195 - 28044101
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaat 323  Q
    ||||||| |||||||||||| || |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||  ||||||||||    
T  28044195 tttcaatacaactttaattttgtctttttcttataaagtaagggcagtttagtaaaaacgttatatccaatgattatttcattttatttcttaat 28044101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 34002187 - 34002081
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagg-gcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    |||||||||||||||||||| || ||||||||||||||||| | ||| ||||| ||| | ||||||||||||||||||||||||  ||||||||||||||    
T  34002187 tttcaatgcaactttaattttgtctttttcttataaagtaaagtgcagtttagcaaaggtgttatatccaatgattatttcatttcatttcttaatctgt 34002088  T
Q  328 gtgtcaa 334  Q
    |||||||    
T  34002087 gtgtcaa 34002081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 17869336 - 17869437
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || |||||||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||  ||| |||||||||||    
T  17869336 tttcaatgcaactttaagtttgtatttttcttataaagtaaagacaatttaataaaagtgttatgtctaatgattatttcatttcattccttaatctgtg 17869435  T
Q  329 tg 330  Q
    ||    
T  17869436 tg 17869437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 3680973 - 3680877
Alignment:
Q  233 aatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgt 329  Q
    ||||||||||||| || || |||||||||||||||||| ||| |||||||||||  |||| || |||||||||||||||| |||| |||||||||||    
T  3680973 aatgcaactttaaatttgtctttttcttataaagtaagagcagtttagtaaaagttttatgtctaatgattatttcattccattttttaatctgtgt 3680877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 34733408 - 34733500
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttctta 321  Q
    ||||||||||||||||| || || |||||||||||||||||||| | ||||||||||| ||||| || |||||||||||||||  ||||||||    
T  34733408 tttcaatgcaactttaagtttgtctttttcttataaagtaagggtagtttagtaaaagtgttatgtctaatgattatttcatttcatttctta 34733500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 36447665 - 36447567
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    ||||||| ||||||||||||  | ||||||||||||||||| | || |||| |||||| |||||||||| | |||||||||||| ||||||||||||||    
T  36447665 tttcaattcaactttaattttatctttttcttataaagtaaagacagtttaataaaagagttatatccagtaattatttcattccatttcttaatctgt 36447567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 32275294 - 32275395
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || |  ||||||||||||||||| |||| |||||||||| ||| || |  |||||||||||||||  |||||||||| ||||    
T  32275294 tttcaatgcaactttaagtttgattttttcttataaagtaaaggcagtttagtaaaaacgtcatgtttaatgattatttcatttcatttcttaatatgtg 32275393  T
Q  329 tg 330  Q
    ||    
T  32275394 tg 32275395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 42259603 - 42259521
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    |||||||||||||||||  | || |||||||||||||||||||||| ||||||||||| ||||| || ||| ||||| |||||    
T  42259603 tttcaatgcaactttaagcttgtctttttcttataaagtaagggcattttagtaaaagtgttatgtctaataattatctcatt 42259521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 26527451 - 26527356
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatct 325  Q
    ||||||||||||||||| ||  | |||||||||||||||||  ||| ||||||||| | ||||| || |||||||||| ||||| ||||||||||||    
T  26527451 tttcaatgcaactttaaattttt-tttttcttataaagtaaaagcagtttagtaaaggtgttatgtctaatgattattgcattccatttcttaatct 26527356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 33056339 - 33056237
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttctta-taaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    ||||||||||  ||||| || || ||||||||| ||||||||||||| ||||||||||| ||||| |  |||||||||||||||  ||| |||||||| |    
T  33056339 tttcaatgcagttttaaatttgtctttttcttaataaagtaagggcagtttagtaaaagtgttatgtttaatgattatttcatttcattccttaatctat 33056240  T
Q  328 gtg 330  Q
    |||    
T  33056239 gtg 33056237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 1103583 - 1103688
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||| |||||||| || || ||||| |||||||||||||| | ||||||||||  ||| | ||   |||||||||||||  ||||||||||||||     
T  1103583 tttcaatgtaactttaaatttgttttttttttataaagtaagggtagtttagtaaaaatgttttgtctggtgattatttcattttatttcttaatctgta 1103682  T
Q  329 tgtcaa 334  Q
    ||||||    
T  1103683 tgtcaa 1103688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 40207444 - 40207379
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatat 294  Q
    ||||||||||| ||||| || ||  ||||||||||||||||||||| ||||||||||| |||||||    
T  40207444 tttcaatgcaattttaagtttgtcattttcttataaagtaagggcagtttagtaaaagtgttatat 40207379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 42121641 - 42121742
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| |   | ||||||| ||||||||||| || ||||||||||| | ||| || ||||||||||| |||  ||| |||||||||||    
T  42121641 tttcaatgcaactttaagtgtatctttttctaataaagtaaggtcagtttagtaaaagtgatatgtctaatgattatttgatttcattccttaatctgtg 42121740  T
Q  329 tg 330  Q
    ||    
T  42121741 tg 42121742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 26963580 - 26963682
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||||||||||||||||  | ||||||||||  |||||  |   ||| ||||| |||| |||||||||| ||||    
T  26963580 tttcaatgcaactttaagtttgtctttttcttataaagtaaggttattttagtaaaattgttatgacatttgactattttattccatttcttaatttgtg 26963679  T
Q  329 tgt 331  Q
    |||    
T  26963680 tgt 26963682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 32345888 - 32345787
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||| ||||||||| || ||||||||||||||||||||||  | ||||||||||  |||||  |   ||| || || |||| |||||||||||||||    
T  32345888 tttcaatacaactttaagtttgtatttttcttataaagtaaggttattttagtaaaattgttatgacatttgactactttattcaatttcttaatctgtg 32345789  T
Q  329 tg 330  Q
    ||    
T  32345788 tg 32345787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 42010629 - 42010524
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||| |||||||| || || ||||||||||||| |||||||| ||||||||||   |||| || ||||||||| | |||| |||| || || |||     
T  42010629 tttcaatgtaactttaagtttgtctttttcttataaaataagggcagtttagtaaaaatattatgtctaatgattatcttattctatttattgatatgta 42010530  T
Q  329 tgtcaa 334  Q
    ||||||    
T  42010529 tgtcaa 42010524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 324
Target Start/End: Complemental strand, 22627408 - 22627313
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatc 324  Q
    ||||||||||||||||| || || || || ||||||||||| |||| ||||||||| | ||||| |  || ||||||||||||  ||| |||||||    
T  22627408 tttcaatgcaactttaagtttgtcttatttttataaagtaaaggcagtttagtaaatgtgttatgtttaacgattatttcatttcattccttaatc 22627313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 10684883 - 10684827
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||| ||||||||| || || |||||||||||||||||||  | ||||||||||    
T  10684883 tttcaattcaactttaagtttgtctttttcttataaagtaaggttattttagtaaaa 10684827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 39117542 - 39117486
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || || ||||||||||||||||  | ||||||||||    
T  39117542 tttcaatgcaactttaagtttgtcttattcttataaagtaaggttattttagtaaaa 39117486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 40298978 - 40299038
Alignment:
Q  270 gggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    ||||| ||||||||||| ||||| |||||| |||||||||||  ||| |||||| ||||||    
T  40298978 gggcagtttagtaaaagtgttatgtccaattattatttcatttcattccttaatttgtgtg 40299038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 7612596 - 7612696
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  7612596 tttcaatgcaactttaattttgtctttttcttataaagtaagggcagtttagt-aaagcgttatatccaatgattatttcattctatttcttaatctgtg 7612694  T
Q  329 tg 330  Q
    ||    
T  7612695 tg 7612696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 2067802 - 2067903
Alignment:
Q  233 aatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtc 332  Q
    |||||||||||||||| || |||| ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| |||||||||||| ||||||    
T  2067802 aatgcaactttaatttggtcttttccttataaagtaagggcagtttaataaaagcgttatatcaaatgattatttcattccatttcttaatctatgtgtc 2067901  T
Q  333 aa 334  Q
    ||    
T  2067902 aa 2067903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 6839305 - 6839405
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||| ||||  || || ||||||||||||||||| |||||||||||||||| ||||| || |||||||||||||||| |||| ||||||||||    
T  6839305 tttcaatgcaattttatgtttgtctttttcttataaagtaaaggcaatttagtaaaagtgttatgtctaatgattatttcattccattttttaatctgtg 6839404  T
Q  329 t 329  Q
    |    
T  6839405 t 6839405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 27109872 - 27109773
Alignment:
Q  232 caatgcaactttaatttcgtatttttcttataaagtaaggg-caatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    |||||||||||||| || ||  ||||||||||||||||  | |||||||||||||| |||||||| |||||||||||||||| |||||||||| ||||||    
T  27109872 caatgcaactttaagtttgtccttttcttataaagtaaaagacaatttagtaaaagtgttatatctaatgattatttcattctatttcttaatatgtgtg 27109773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 11336087 - 11335988
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||||||||||||||||      ||||||||||| |||||||| |||| ||| ||||||  |||||||||||||||    
T  11336087 tttcaatgcaactttaattttgtctttttcttataaagtaa------tttagtaaaagtgttatatcgaatggttacttcattacatttcttaatctgtg 11335994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 22601233 - 22601315
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    ||||||||||||||||| || || ||||||||||||||||| | |||||||||||||| ||||| || |||||||||||||||    
T  22601233 tttcaatgcaactttaagtttgtctttttcttataaagtaaagacaatttagtaaaagagttatgtctaatgattatttcatt 22601315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 38329108 - 38329008
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || ||||  ||||||||||||| || ||||||||||| ||||| || |||||||||||||||| ||| |||||||||||    
T  38329108 tttcaatgcaactttaagtttgtcttttgattataaagtaagg-cagtttagtaaaagtgttatgtctaatgattatttcattccattccttaatctgtg 38329010  T
Q  329 tg 330  Q
    ||    
T  38329009 tg 38329008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 24732079 - 24732151
Alignment:
Q  262 taaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaa 334  Q
    ||||||| ||||| ||||||||||| |||||||||||||| |||||||||| |||||||||||||| ||||||    
T  24732079 taaagtaggggcagtttagtaaaagtgttatatccaatgactatttcattcaatttcttaatctgtatgtcaa 24732151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 30789033 - 30789115
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    ||||||| ||||||||| || || ||||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||||    
T  30789033 tttcaatacaactttaaatttgtctttttcttataaagtaaggacaatttaataaaagtgttatgtctaatgattatttcatt 30789115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 327
Target Start/End: Original strand, 36915463 - 36915561
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    ||||||||||||||||| || || |||||| ||||||  ||||||||||||||||||   |||| || |||||||||||||||| ||| ||||||||||    
T  36915463 tttcaatgcaactttaagtttgtctttttcatataaaacaagggcaatttagtaaaaatattatgtctaatgattatttcattccattccttaatctgt 36915561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 32326779 - 32326678
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||| ||||||  ||||||| ||||||||||| ||||  || |||||||||||||||  ||| |||||||||||    
T  32326779 tttcaatgcaactttaaatttgtctttttcatataaaacaagggcagtttagtaaaagtgttacgtctaatgattatttcatttcattccttaatctgtg 32326680  T
Q  329 tg 330  Q
    ||    
T  32326679 tg 32326678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 7129378 - 7129485
Alignment:
Q  232 caatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgat-----tatttcattcgatttcttaatctg 326  Q
    ||||||||||||||||| || || ||||||||||||||   || ||||||||||||||||||| |||||||     |||||||||| ||||||||||||     
T  7129378 caatgcaactttaattttgtcttattcttataaagtaaaatcagtttagtaaaagcgttatattcaatgattatactatttcattccatttcttaatcta 7129477  T
Q  327 tgtgtcaa 334  Q
    | ||||||    
T  7129478 tatgtcaa 7129485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 45187350 - 45187249
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||| |||||||||| || || |||||||||||||  |||| || ||||||||||| || || || |||||||||||||||  ||| |||||||||||    
T  45187350 tttcaaagcaactttaagtttgtctttttcttataaaacaaggacagtttagtaaaagtgtcatgtctaatgattatttcattatattccttaatctgtg 45187251  T
Q  329 tg 330  Q
    ||    
T  45187250 tg 45187249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 9022493 - 9022595
Alignment:
Q  229 tttcaatgcaacttt-aatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    ||||||||||||||| || || || |||||| ||||||  ||| ||| ||||||||||| ||||| || |||||||| ||||||| |||| |||||||||    
T  9022493 tttcaatgcaacttttaagtttgtctttttcatataaaacaagtgcagtttagtaaaagtgttatgtctaatgattaattcattccattttttaatctgt 9022592  T
Q  328 gtg 330  Q
    |||    
T  9022593 gtg 9022595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 32737887 - 32737961
Alignment:
Q  253 tttttcttataaagtaa-gggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    ||||||||||||||||| ||||| ||||  ||||| |||||||| |||||| ||||||||| ||||||||||||||    
T  32737887 tttttcttataaagtaaagggcagtttaacaaaagtgttatatctaatgat-atttcattcaatttcttaatctgt 32737961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 41790195 - 41790113
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    ||||||| ||||||||| || || |||||||||||||| || | ||||||| ||||||  |||| || |||||||||||||||    
T  41790195 tttcaatccaactttaaatttgtctttttcttataaagcaaagacaatttaataaaagtattatgtctaatgattatttcatt 41790113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 18666595 - 18666534
Alignment:
Q  233 aatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatat 294  Q
    |||||||||||| | | || ||||||||||||||||||| || ||||||||||| |||||||    
T  18666595 aatgcaactttagtgttgtctttttcttataaagtaaggacagtttagtaaaagtgttatat 18666534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 1774125 - 1774085
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaa 269  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  1774125 tttcaatgcaactttaattttgtctttttcttataaagtaa 1774085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 8471357 - 8471413
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || |||||||||||||||||||  | ||||||||||    
T  8471357 tttcaatgcaactttaagtttgtctttttcttataaagtaaggttattttagtaaaa 8471413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 29931295 - 29931224
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatg 300  Q
    ||||||||||||||||||||  | ||| ||||||||| ||| |||| |||| |||||| ||||||| |||||    
T  29931295 tttcaatgcaactttaattttttctttctcttataaaataaaggcagtttaataaaagtgttatattcaatg 29931224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 2812915 - 2812968
Alignment:
Q  270 gggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaat 323  Q
    ||||| ||||||||||| ||||| || |||||||||||||||| ||| ||||||    
T  2812915 gggcagtttagtaaaagtgttatgtctaatgattatttcattcaattacttaat 2812968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 3095525 - 3095465
Alignment:
Q  271 ggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgt 331  Q
    |||| ||||||||||| || ||||  |||||||||||||||| |||| ||||| |||||||    
T  3095525 ggcagtttagtaaaagtgtcatatttaatgattatttcattctattttttaatttgtgtgt 3095465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 325
Target Start/End: Complemental strand, 5588517 - 5588426
Alignment:
Q  233 aatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatct 325  Q
    |||| |||||||| || || ||||||||||||| | ||| || ||||||||||  ||||| |  |||||||||||||||  ||||||||||||    
T  5588517 aatgtaactttaagtttgtctttttcttataaattgagg-cagtttagtaaaaatgttatgtttaatgattatttcattatatttcttaatct 5588426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 14541800 - 14541744
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || || ||||||||||||||||  | ||||||||||    
T  14541800 tttcaatgcaactttaagtttgtcttgttcttataaagtaaggttattttagtaaaa 14541744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 34168266 - 34168210
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || || ||||||||||||||||  | ||||||||||    
T  34168266 tttcaatgcaactttaagtttgtcttgttcttataaagtaaggttattttagtaaaa 34168210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 4840781 - 4840680
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| ||||    
T  4840781 tttcaatgcaactttaattttgtctttttcttataaagtaagggcagtttagtaaaaacgttatatccaatgattatttcattccatttcttaatatgtg 4840682  T
Q  329 tg 330  Q
    ||    
T  4840681 tg 4840680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 40410541 - 40410642
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  40410541 tttcaatgcaactttaattttgtctttttcttataaagtaagggcagtttaataaaagcgttatatccaatgattatgtcattccatttcttaatctgtg 40410640  T
Q  329 tg 330  Q
    ||    
T  40410641 tg 40410642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 1298834 - 1298738
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatct 325  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||||||||||    
T  1298834 tttcaatgcaactttaattttgtctttttcttataaagtaagggcaatttagtaaaaacgttatattcaatgattatttcattttatttcttaatct 1298738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 4766266 - 4766184
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    |||||||||||||||||||| || ||||||||||||||||| |||| |||||||| | |||||||||||||||||||||||||    
T  4766266 tttcaatgcaactttaattttgtctttttcttataaagtaaaggcagtttagtaataacgttatatccaatgattatttcatt 4766184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 7743499 - 7743600
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || ||||||||||||||||||||||| |||||||||| ||||||||  ||||||||||||||  |||  ||||||||||    
T  7743499 tttcaatgcaactttaaatttgtctttttcttataaagtaagggcaacttagtaaaagtgttatatctgatgattatttcatttaattctttaatctgtg 7743598  T
Q  329 tg 330  Q
    ||    
T  7743599 tg 7743600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 14378302 - 14378201
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| ||  | |||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||||| |||  |||| |||||    
T  14378302 tttcaatgcaactttaaatttatctttttcttataaagtaagggcagtttagtaaaagtgttatattaaatgattatttcattctattcattaaactgtg 14378203  T
Q  329 tg 330  Q
    ||    
T  14378202 tg 14378201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 34225848 - 34225949
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||||||||||||||||||||||||||||||   |||| || |||||||||||||||  ||| |||||||| ||    
T  34225848 tttcaatgcaactttaagtttgtctttttcttataaagtaagggcaatttagtaaaattattatgtctaatgattatttcatttcattccttaatctatg 34225947  T
Q  329 tg 330  Q
    ||    
T  34225948 tg 34225949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 40987336 - 40987235
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| ||  | ||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||  ||| |||||| ||||    
T  40987336 tttcaatgcaactttaaatttatctttttcttataaagtaaggacaatttagtaaaagtgttatgtctaatgattatttcatttcattccttaatatgtg 40987237  T
Q  329 tg 330  Q
    ||    
T  40987236 tg 40987235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 43460871 - 43460961
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaa 322  Q
    ||||||| |||||||||||| || |||| ||||||||||||||||| |||||||||||   | ||||||||||||||||||||| |||||||||    
T  43460871 tttcaatacaactttaattttgtcttttccttataaagtaagggcagtttagtaaaag---tgtatccaatgattatttcattccatttcttaa 43460961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 24775287 - 24775388
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||  |||||||| || || |||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||| ||  |||||| ||||    
T  24775287 tttcaatataactttaagtttgtttttttcttataaagtaagagcattttagtaaaagtgttatatctaatgattatttcattcaataccttaatttgtg 24775386  T
Q  329 tg 330  Q
    ||    
T  24775387 tg 24775388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 37106960 - 37107062
Alignment:
Q  229 tttcaatgcaactttaatttcgtattttt--cttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctg 326  Q
    ||||||||||||||||| ||  | |||||  ||||||||||||||||||||||||||||| ||| | || ||| |||||||||||| |||||||||| ||    
T  37106960 tttcaatgcaactttaagtttttcttttttgcttataaagtaagggcaatttagtaaaagtgttgtgtcaaataattatttcattccatttcttaatgtg 37107059  T
Q  327 tgt 329  Q
    |||    
T  37107060 tgt 37107062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 326
Target Start/End: Complemental strand, 29795253 - 29795156
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctg 326  Q
    |||||||||||||||||  | || ||||||||||||| |||||||| |||||||||||  |||| || |||||||||||||||| |||  ||||||||    
T  29795253 tttcaatgcaactttaaagttgtctttttcttataaaataagggcagtttagtaaaagtattatgtctaatgattatttcattccattcattaatctg 29795156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 16316807 - 16316863
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||    
T  16316807 tttcaatgcaactttaattttgtctttttcttatacagtaagggcaatttagtaaaa 16316863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 36360429 - 36360347
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    ||||||| ||||||||| ||  | ||||||||||||| |||||||| ||||||||||| ||||| || |||||||||||||||    
T  36360429 tttcaatacaactttaagtttatctttttcttataaaataagggcagtttagtaaaagtgttatgtctaatgattatttcatt 36360347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 1381837 - 1381916
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttc 308  Q
    ||||||||||| ||||| ||  | |||||||||||||||||| ||| ||||||||||| ||||| || ||||||||||||    
T  1381837 tttcaatgcaattttaagtttttctttttcttataaagtaagagcagtttagtaaaagtgttatgtctaatgattatttc 1381916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 11171844 - 11171946
Alignment:
Q  232 caatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgt 331  Q
    ||||| |||||||| || || ||||||  ||||||| |||  ||||||||||||| ||||| || | ||||||||| |||| |||||||||| |||| ||    
T  11171844 caatgtaactttaagtttgtctttttcgcataaagttaggataatttagtaaaagtgttatgtctattgattattttattcaatttcttaatttgtgcgt 11171943  T
Q  332 caa 334  Q
    |||    
T  11171944 caa 11171946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 44228611 - 44228665
Alignment:
Q  276 tttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    ||||||||||| |||||||| |||||||||||||||| |||| |||||| |||||    
T  44228611 tttagtaaaagtgttatatctaatgattatttcattccattttttaatccgtgtg 44228665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 43344253 - 43344172
Alignment:
Q  253 tttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaa 334  Q
    ||||||||||||||||||||   |||| |||||  ||||| || ||||||||||||||| |||||| |||| | ||||||||    
T  43344253 tttttcttataaagtaagggtggtttaataaaattgttatgtctaatgattatttcatttgatttcataatttatgtgtcaa 43344172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 43388711 - 43388610
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||| ||||||||| || ||||||||||||||||||||||  | ||||||||||  |||||  |   ||| || || |||| |||||||||||||||    
T  43388711 tttcaatacaactttaagtttgtatttttcttataaagtaaggttattttagtaaaattgttatgacatttgactactttattcaatttcttaatctgtg 43388612  T
Q  329 tg 330  Q
    ||    
T  43388611 tg 43388610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 14698088 - 14698144
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||| ||||||||| || ||||||||||||||||||||||  | ||||||||||    
T  14698088 tttcaatacaactttaagtttgtatttttcttataaagtaaggttattttagtaaaa 14698144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 775938 - 775882
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || ||||||||||||| |||||  | ||||||||||    
T  775938 tttcaatgcaactttaagtttgtctttttcttataaattaaggttattttagtaaaa 775882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 1641 - 1742
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||  |||||||||||| ||    
T  1641 tttcaatgcaactttaattttgtctttttcttataaagtaagggcaatttagtaaaaacgttatatccaataattatttcattatatttcttaatctttg 1740  T
Q  329 tg 330  Q
    ||    
T  1741 tg 1742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 26669152 - 26669051
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||  |||||||||||| ||    
T  26669152 tttcaatgcaactttaattttgtctttttcttataaagtaagggcaatttagtaaaaacgttatatccaataattatttcattatatttcttaatctttg 26669053  T
Q  329 tg 330  Q
    ||    
T  26669052 tg 26669051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 32258841 - 32258916
Alignment:
Q  259 ttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaa 334  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32258841 ttataaagcaagggcagtttagtaaaagcgttatatccaatgattatttcaatcgatttcttaatctgtgtgtcaa 32258916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 1924728 - 1924634
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaat 323  Q
    |||||||||||||||||||| ||||||| ||||||||||||| | | |||||||||| |||||||||||||||||||||||||  ||||||||||    
T  1924728 tttcaatgcaactttaattttgtattttccttataaagtaagagaagtttagtaaaaacgttatatccaatgattatttcattatatttcttaat 1924634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 23936638 - 23936537
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaa-gggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    ||||||||||||||||| || || ||||||||||||||||| |||||||| |||||||  |||||||| |||||||||||||||| |||||||||| |||    
T  23936638 tttcaatgcaactttaaatttgtttttttcttataaagtaaagggcaattcagtaaaaatgttatatctaatgattatttcattccatttcttaatatgt 23936539  T
Q  328 gt 329  Q
    ||    
T  23936538 gt 23936537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 29927306 - 29927411
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||||||||||||||||  |  |||||||||| ||||| || |||||||||||||||| |||| ||||||||||    
T  29927306 tttcaatgcaactttaagtttgtctttttcttataaagtaaggatatgttagtaaaagtgttatgtctaatgattatttcattctattttttaatctgtg 29927405  T
Q  329 tgtcaa 334  Q
    ||||||    
T  29927406 tgtcaa 29927411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 12828735 - 12828653
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    |||||||||||||||||  | || |||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||    
T  12828735 tttcaatgcaactttaagcttgtctttttcttataaagtaagggcagtttagtaaaagtgttatgtctaatgattatttcatt 12828653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 29915643 - 29915742
Alignment:
Q  232 caatgcaactttaatttcgtatttttcttataaagtaag-ggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    |||||||||||||  || || |||||||||||||||||  |||| ||||||||||| ||||| || ||| |||||||||||| |||||||||| ||||||    
T  29915643 caatgcaactttatgtttgtctttttcttataaagtaaatggcagtttagtaaaagtgttatttctaattattatttcattcaatttcttaatatgtgtg 29915742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 334
Target Start/End: Complemental strand, 34439460 - 34439357
Alignment:
Q  232 caatgcaactttaatttcgtatttttcttataaagtaa-gggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    |||||||||||||  || || ||||||||||||| ||| |||||||||| |||||  |||||||| |||||||||||||||  |||||||||| | ||||    
T  34439460 caatgcaactttatgtttgtctttttcttataaaataaagggcaatttaataaaaatgttatatctaatgattatttcatttcatttcttaatttatgtg 34439361  T
Q  331 tcaa 334  Q
    ||||    
T  34439360 tcaa 34439357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 4131978 - 4131897
Alignment:
Q  253 tttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaa 334  Q
    ||||||||||||| ||| || | ||||||||||  |||||||  ||||||||||| |||  |||||||||| ||||||||||    
T  4131978 tttttcttataaaataaaggtagtttagtaaaaatgttatatataatgattatttaattttatttcttaatatgtgtgtcaa 4131897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 31275695 - 31275594
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||| ||||||  ||||||| ||| ||||||| ||||  || |||| ||||||||||   || |||||||||||    
T  31275695 tttcaatgcaactttaagtttgtctttttcatataaaacaagggcagtttggtaaaagtgttacgtctaatggttatttcatttctttccttaatctgtg 31275596  T
Q  329 tg 330  Q
    ||    
T  31275595 tg 31275594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 52403574 - 52403679
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||| |||||||||||||| || |||| ||||||||||||||||| |||| ||| || ||||||||||||||||||||||||| ||||||||||||||     
T  52403574 tttcagtgcaactttaattttgtcttttccttataaagtaagggcagtttaataacagtgttatatccaatgattatttcattccatttcttaatctgta 52403673  T
Q  329 tgtcaa 334  Q
    ||||||    
T  52403674 tgtcaa 52403679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 84572 - 84471
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || ||||||||||||||||||| || ||||||||||| ||||| || |||||||||||||||| ||| |||||||||||    
T  84572 tttcaatgcaactttaagtttgtctttttcttataaagtaaggacattttagtaaaagtgttatgtctaatgattatttcattcaattccttaatctgtg 84473  T
Q  329 tg 330  Q
    ||    
T  84472 tg 84471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 324
Target Start/End: Complemental strand, 24041078 - 24040983
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatc 324  Q
    ||||||||||||||||| || || |||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||| ||| |||||||    
T  24041078 tttcaatgcaactttaagtttgtctttttcttataaagtaagggcagtttagtaaaagtgttatgtctaatgattatttcattccattccttaatc 24040983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 30006228 - 30006329
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| ||  | |||||||||||||||||| |||||||||||| || ||||| || |||||||||||||||| |||  ||||||||||    
T  30006228 tttcaatgcaactttaaatttatctttttcttataaagtaagagcaatttagtaatagtgttatgtctaatgattatttcattcaattcattaatctgtg 30006327  T
Q  329 tg 330  Q
    ||    
T  30006328 tg 30006329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 1430588 - 1430489
Alignment:
Q  232 caatgcaactttaatttcgtatttttcttataaagtaagg-gcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    |||||||||||||| || || ||||||||||||||||| | ||| ||||||||||| |||||||| ||| |||||||||||  |||||||||||||||||    
T  1430588 caatgcaactttaagtttgtctttttcttataaagtaaagtgcagtttagtaaaagtgttatatctaattattatttcattaaatttcttaatctgtgtg 1430489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 37437458 - 37437356
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagt-aaaagcgttatatccaatgattatttcattcgatttcttaatctgt 327  Q
    ||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||  ||| |||||| |||    
T  37437458 tttcaatgcaactttaagtttgtctttttcttataaagtaagggcaatttagtaaaaagtgttatgtctaatgaatatttcatttcattccttaatatgt 37437359  T
Q  328 gtg 330  Q
    |||    
T  37437358 gtg 37437356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 43105656 - 43105562
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaat 323  Q
    ||||||||||| ||||| || || ||||||||||||| ||| || ||||||||||||| ||||| || |||||||||||||||| ||||||||||    
T  43105656 tttcaatgcaattttaagtttgtctttttcttataaaataatggtaatttagtaaaagtgttatgtctaatgattatttcattcaatttcttaat 43105562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 5317632 - 5317535
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaaggg-caatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatct 325  Q
    ||||||||||||||||| || || ||||||||||||| |||||| |||||||||||||| ||||| || |||||||||||||||  ||| ||||||||    
T  5317632 tttcaatgcaactttaagtttgtctttttcttataaaataaggggcaatttagtaaaagtgttatgtctaatgattatttcatttcattccttaatct 5317535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 10691009 - 10690908
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||||||  ||||||| ||| ||||||||||  |||||||| |||||||||||||||  |||||||||| ||||    
T  10691009 tttcaatgcaactttaagtttgtctttttcttacgaagtaagtgcagtttagtaaaaatgttatatctaatgattatttcatttcatttcttaatatgtg 10690910  T
Q  329 tg 330  Q
    ||    
T  10690909 tg 10690908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 330
Target Start/End: Complemental strand, 40060936 - 40060859
Alignment:
Q  253 tttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    |||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||  |||||||||| ||||||    
T  40060936 tttttcttataaagtaagggcaatttagtaaaagtgttatgtctaatcattatttcatttcatttcttaatatgtgtg 40060859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 334
Target Start/End: Original strand, 43929790 - 43929887
Alignment:
Q  237 caactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaa 334  Q
    ||||||||| || || ||||||||||||||||| || | | ||||||||| ||||| || |||||||||||||||| |||||||||| ||||||||||    
T  43929790 caactttaagttagtctttttcttataaagtaatggaagtatagtaaaagtgttatgtctaatgattatttcattcaatttcttaatttgtgtgtcaa 43929887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 48259917 - 48259816
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| ||  | |||||||||||||| ||||||| |||| |||||| ||||| || || ||||||||||||| ||| |||||||||||    
T  48259917 tttcaatgcaactttaagtttatctttttcttataaagcaagggcagtttaataaaagtgttatgtctaacgattatttcattctattccttaatctgtg 48259818  T
Q  329 tg 330  Q
    ||    
T  48259817 tg 48259816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 232 - 332
Target Start/End: Original strand, 11650159 - 11650259
Alignment:
Q  232 caatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgt 331  Q
    |||||||||||||| || || |||||||| ||||||||||||| ||||||||||    |||||| |||| ||||||||||| |||||||||||||| |||    
T  11650159 caatgcaactttaagtttgtctttttcttttaaagtaagggcagtttagtaaaaatactatatctaatggttatttcattcaatttcttaatctgtatgt 11650258  T
Q  332 c 332  Q
    |    
T  11650259 c 11650259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 1428967 - 1429070
Alignment:
Q  232 caatgcaactttaatttcgtatttttcttataaagtaa-gggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    |||| ||||||||| || ||  |||||||||||||||| ||||| ||||||||||| |||||||| ||| |||||||||||| |||||||||| | ||||    
T  1428967 caattcaactttaagtttgtccttttcttataaagtaaagggcagtttagtaaaagtgttatatctaataattatttcattcaatttcttaatatatgtg 1429066  T
Q  331 tcaa 334  Q
    ||||    
T  1429067 tcaa 1429070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 28751462 - 28751361
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||| |||||||| || ||  ||||||||||||||||||||| ||||||||||  ||||| || ||||||||||| |||  ||| |||||||||||    
T  28751462 tttcaatgtaactttaagtttgtccttttcttataaagtaagggcagtttagtaaaaatgttatgtctaatgattattttatttcattccttaatctgtg 28751363  T
Q  329 tg 330  Q
    ||    
T  28751362 tg 28751361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 50158342 - 50158267
Alignment:
Q  259 ttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaa 334  Q
    |||||||| ||||| | ||||||||||| ||||||||||||||||||| ||||  |||||||||||| ||||||||    
T  50158342 ttataaagcaagggaagtttagtaaaagtgttatatccaatgattattgcattatatttcttaatctatgtgtcaa 50158267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 50349917 - 50349811
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataa------agtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaa 322  Q
    ||||||||||||||||| || || ||||||||||||      |||||||||| ||||||||||| ||||| || |||||||||||||||| ||| |||||    
T  50349917 tttcaatgcaactttaagtttgtctttttcttataattataaagtaagggcagtttagtaaaagtgttatgtctaatgattatttcattccattccttaa 50349818  T
Q  323 tctgtgt 329  Q
    | |||||    
T  50349817 tttgtgt 50349811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 6332265 - 6332366
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||| |||||||  || || |||||| ||||||  || |||| ||||||||||| ||||| || |||||||||||||||| |||||||||| ||||    
T  6332265 tttcaatgtaactttatgtttgtctttttcatataaaacaaaggcagtttagtaaaagtgttatgtctaatgattatttcattcaatttcttaatttgtg 6332364  T
Q  329 tg 330  Q
    ||    
T  6332365 tg 6332366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 45749553 - 45749470
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattc 312  Q
    |||||||| || ||||| || || |||||||||||||||||||||  ||||||||||| ||||| || ||||||||||| ||||    
T  45749553 tttcaatgtaaatttaagtttgtctttttcttataaagtaagggcggtttagtaaaagtgttatgtctaatgattattttattc 45749470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 2245886 - 2245991
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||| |||||| || || |||||||||||||| || | || ||||||||||   |||| |  |||||||| ||||||| |||||||||||| ||    
T  2245886 tttcaatgcatctttaagtttgtctttttcttataaaggaatgacagtttagtaaaaatattatgtttaatgattacttcattccatttcttaatctatg 2245985  T
Q  329 tgtcaa 334  Q
    ||||||    
T  2245986 tgtcaa 2245991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 12002344 - 12002445
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || |||||| ||||||  ||||||| |||||||||||  |||| ||  ||||||||||||||  ||| |||||| ||||    
T  12002344 tttcaatgcaactttaagtttgtctttttcatataaaacaagggcagtttagtaaaagtattatgtctgatgattatttcatttcattccttaatatgtg 12002443  T
Q  329 tg 330  Q
    ||    
T  12002444 tg 12002445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 334
Target Start/End: Original strand, 44583870 - 44583974
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||||||||||| |||| || || ||||||||||||| ||||| || ||||| ||||  ||||| || ||||||||||| |||  |||||||||| ||||    
T  44583870 tttcaatgcaacattaagtttgtctttttcttataaaataagg-cagtttaggaaaattgttatgtctaatgattattttatttcatttcttaatttgtg 44583968  T
Q  329 tgtcaa 334  Q
    ||||||    
T  44583969 tgtcaa 44583974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 48320055 - 48319958
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    |||| |||||||||||| || || ||| | ||||||||||||||||||||||||||||  |||| || |||||    ||||||| |||||||||| ||||    
T  48320055 tttcgatgcaactttaagtttgtctttcttttataaagtaagggcaatttagtaaaagtcttatgtctaatga----ttcattccatttcttaatatgtg 48319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 2459104 - 2459205
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||| ||||||||| || ||||||||||||||||||||||  | ||||||||||  |||||  |   ||| || ||||||  |||||||||||||||    
T  2459104 tttcaatacaactttaagtttgtatttttcttataaagtaaggttattttagtaaaattgttatgacatttgactacttcatttaatttcttaatctgtg 2459203  T
Q  329 tg 330  Q
    ||    
T  2459204 tg 2459205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 28200276 - 28200220
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||| ||||||||| || ||||||||||||||||||||||  | ||||||||||    
T  28200276 tttcaatacaactttaagtttgtatttttcttataaagtaaggttattttagtaaaa 28200220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 17919874 - 17919793
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    ||||||||||||||||| || || |||||  ||||||  ||||||| ||||||||||| ||||| |  |||||||||||||||    
T  17919874 tttcaatgcaactttaagtttgtctttttaatataaaacaagggcagtttagtaaaagtgttatgt-taatgattatttcatt 17919793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 6377299 - 6377258
Alignment:
Q  270 gggcaatttagtaaaagcgttatatccaatgattatttcatt 311  Q
    ||||||||||||||||| ||||| || |||||||||||||||    
T  6377299 gggcaatttagtaaaagtgttatgtctaatgattatttcatt 6377258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 43755134 - 43755183
Alignment:
Q  237 caactttaatttcgtatttttcttataaagtaagggcaatttagtaaaag 286  Q
    ||||||||| || || |||||||||| |||||||||| ||||||||||||    
T  43755134 caactttaagtttgtctttttcttattaagtaagggcgatttagtaaaag 43755183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 44582832 - 44582791
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaag 270  Q
    ||||||||||||||||| || || ||||||||||||||||||    
T  44582832 tttcaatgcaactttaagtttgtctttttcttataaagtaag 44582791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 254965 - 254909
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||||||||||||| || || |||||||||||||||| ||  | ||||||||||    
T  254965 tttcaatgcaactttaagtttgtctttttcttataaagtagggttattttagtaaaa 254909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 12135 - 12035
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || || ||||||||||||||||||| || ||||||||||| ||||| || |||||||||||||||| ||| |||||||| ||    
T  12135 tttcaatgcaactttaagtttgtctttttcttataaagtaagg-cagtttagtaaaagtgttatgtctaatgattatttcattccattccttaatctctg 12037  T
Q  329 tg 330  Q
    ||    
T  12036 tg 12035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 8277 - 8348
Alignment:
Q  259 ttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||    
T  8277 ttataaagcaagggcagtttagtaaaagccttatatccaatgattatttcattccattttttaatctgtgtg 8348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 1696 - 1773
Alignment:
Q  253 tttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    ||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||||  |||||||||||| ||||    
T  1696 tttttcttataaagtaaggtcagtttagtaaaaatgttatatccaatgattatttcatttcatttcttaatctatgtg 1773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 9435 - 9512
Alignment:
Q  253 tttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    ||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||||  |||||||||||| ||||    
T  9435 tttttcttataaagtaaggtcagtttagtaaaaatgttatatccaatgattatttcatttcatttcttaatctatgtg 9512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 4139 - 4057
Alignment:
Q  252 atttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaa 334  Q
    |||||| ||||||||||||| |||||| ||||||  ||||| |  ||||||| |||||||| |||||||||| ||||| ||||    
T  4139 attttttttataaagtaaggacaatttcgtaaaaatgttatgtataatgattgtttcattccatttcttaatatgtgtttcaa 4057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 16093 - 15989
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtg 328  Q
    ||||||||||||||||| || ||  |||| ||||||||||| || | ||||||||||  |||||||  |||||||||||||||  |||| ||||| ||||    
T  16093 tttcaatgcaactttaagtttgtcatttt-ttataaagtaaaggtagtttagtaaaaatgttatatataatgattatttcatttaattttttaatatgtg 15995  T
Q  329 tgtcaa 334  Q
    | ||||    
T  15994 tttcaa 15989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 70507 - 70451
Alignment:
Q  229 tttcaatgcaactttaatttcgtatttttcttataaagtaagggcaatttagtaaaa 285  Q
    ||||||| ||||||||| || ||||||||||||||||||||||  | ||||||||||    
T  70507 tttcaatacaactttaagtttgtatttttcttataaagtaaggttattttagtaaaa 70451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 13075 - 13021
Alignment:
Q  276 tttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtg 330  Q
    ||||||||||| ||||| || |||||||||||||||  ||| |||||||||||||    
T  13075 tttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgtgtg 13021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University