View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12690_high_1_N (Length: 350)
Name: NF12690_high_1_N
Description: NF12690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12690_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 54546567 - 54546231
Alignment:
| Q |
15 |
actctatgcatgttttggag--gtttggtggaaaatttgcattttctttttcattgtcccaacacaatgcgcgttgttgacaaatgagttcaactctctt |
112 |
Q |
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| T |
54546567 |
actctatgcatgtgttggagaggttgggtggaaaatttgcattttctttttcattgtcccaacacaatgcgcgttgttgacaaatgagttcaactctctt |
54546468 |
T |
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| Q |
113 |
gacaaatagtggtgttgtggaagcattcattcaattccggctatgcacaacaatgtcaatgatgtatttcttgaaattctacggcgcatcgtgaagacaa |
212 |
Q |
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| T |
54546467 |
gacaaatagtggtgttgtggaagcattcattcaattccggctatgcacaacaatgtcaatgatgtatttcttgaaattctatggcgcatcgtgaagacaa |
54546368 |
T |
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| Q |
213 |
cctttttgttgtttgtttggtgatgatatggagtatttcaaagcaatacaacaacatggtttggaataagaaagttgatcaacgagtttggaatcgaacc |
312 |
Q |
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| T |
54546367 |
cctttttgttgtttgtttggtgatgatatagagtatttcaaagcaacgcaacaacatggtttggaataagaaagtagatcaatgagtttggaatcgaacc |
54546268 |
T |
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| Q |
313 |
atgcaggttttagaaggttgacattttgtatttatgt |
349 |
Q |
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| T |
54546267 |
atgcaggttttagaaggttgacattttgtatttatgt |
54546231 |
T |
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