View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12690_low_1 (Length: 766)
Name: NF12690_low_1
Description: NF12690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12690_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 736151 - 735616
Alignment:
| Q |
1 |
ccatgccatggaaccatacatgtcgcacaaaatagcctatgacatgaaggacactccgcgctagtaacaacatcatcgccatcattcaccaacaaaaccg |
100 |
Q |
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| T |
736151 |
ccatgccacggaaccatacattgcgcacaaaatagcctatgacatgaaggacactccgcgctagtaacaacatcatcgccatcattcaccaacaaaaccg |
736052 |
T |
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| Q |
101 |
aacaattcttgaatggacaataagtagtcttttgccacccaacaatacaagattgcaccaaatcttcttgaactggaggaggactaggagactcattaca |
200 |
Q |
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| T |
736051 |
aacaattcttgaatggacaataagtagtcttttgccacccaacaatacaagattgcaccaaatcttcttgaactggaggaggactaggagactcattaca |
735952 |
T |
|
| Q |
201 |
tagacgcgcactctttctaattggacataaggacttggactgtgaaactggtgtaagattttctttatcaccagagggagattctctcttctttgaaaaa |
300 |
Q |
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| T |
735951 |
tagacgcgcactctttctaattggacataaggacttggactgtgaaactggtgtaagattttctttatcaccaaagggagattctctcttctttgaaaaa |
735852 |
T |
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| Q |
301 |
tggttttcgcagggctcaaggatttcacatttgagtttgttgtgttggaattgttgacaggtttcacctgcatgccaaggaactttgcatcgcgagcaga |
400 |
Q |
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| T |
735851 |
tggttttcgcagggatcaaggatttcacatttgagtttgttgtgttggaattgttgacaggtttcacctgcatgccaaggaacgttgcatcgcgagcaga |
735752 |
T |
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| Q |
401 |
ataacctatgacaaatggggcaatctgcatcaataacagtttgaaacccatcattcaagagataacctgagcaattcttgaacggacaaatcacccacat |
500 |
Q |
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| T |
735751 |
ataacctatgacaaatggggcaatctgcatcaataacagtttgaaacccatcattcaagagataacctgagcaattcttgaacggacaaatcacccacat |
735652 |
T |
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| Q |
501 |
atcgttatcatcagcttcatcgtagaaaactattct |
536 |
Q |
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| T |
735651 |
atcgttatcatcagcttcatcgtagaaaactattct |
735616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 568 - 756
Target Start/End: Complemental strand, 48596477 - 48596289
Alignment:
| Q |
568 |
gtagtagtggtagtagtagtatagaaattggtgttgtaatattgagggtgagatattgtaggagaaggggcagcgtaattaggattaggaaggtgagaat |
667 |
Q |
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| T |
48596477 |
gtagtagtggtagtagtagtatagaaattggtgttgtaatattgagggtgagatattgtaggagaaggggcagcgtaattaggattaggaaggtgagaat |
48596378 |
T |
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| Q |
668 |
attgaggggaggtgtataatgatctagcagtagcagcatatgatgagtagtgatagtgatgattgggaggaagatagaaaggcagtgaa |
756 |
Q |
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| T |
48596377 |
attgaggggaggtgtataatgatctagcagtagcagcatatgatgagtagtgatagtgatgattgggaggaagatagaaaggcagtgaa |
48596289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 24976620 - 24976664
Alignment:
| Q |
81 |
atcattcaccaacaaaaccgaacaattcttgaatggacaataagt |
125 |
Q |
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| T |
24976620 |
atcattaaccaacaaaacagaacaattcttaaatggacaataagt |
24976664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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