View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12690_low_4 (Length: 234)
Name: NF12690_low_4
Description: NF12690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12690_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 1962868 - 1962668
Alignment:
| Q |
12 |
cataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgtccttaaagttaaggactt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1962868 |
cataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgcccttaaagttaaggactt |
1962769 |
T |
|
| Q |
112 |
caaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggctaaagcaaccccttgtggtaggtcattagagttcactggtgga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1962768 |
caaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggctaaagcaaccccttgtggtaggtcattagagttcactggtgga |
1962669 |
T |
|
| Q |
212 |
a |
212 |
Q |
| |
|
| |
|
|
| T |
1962668 |
a |
1962668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 2015561 - 2015761
Alignment:
| Q |
12 |
cataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgtccttaaagttaaggactt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2015561 |
cataggacaacaagttgaattccttagcaaaatccagtgcatccattgctgatatatcaaccaccaaggcaacaaagggtgtctttaaagttaaggactt |
2015660 |
T |
|
| Q |
112 |
caaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggctaaagcaaccccttgtggtaggtcattagagttcactggtgga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
2015661 |
caaggcctgatgtatagatggcagtgagtgagtcagtgtgagctgaagttgaagtactaaagcaatcccttgtggtaggtcattggagttcactggtgga |
2015760 |
T |
|
| Q |
212 |
a |
212 |
Q |
| |
|
| |
|
|
| T |
2015761 |
a |
2015761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 2018944 - 2019144
Alignment:
| Q |
12 |
cataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgtccttaaagttaaggactt |
111 |
Q |
| |
|
|||||||||||| |||||| || |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018944 |
cataggacaacatgttgaactctttagcaaaatctagtgcatcgattgctaatgaatcaaccaccaaggcaacaaagggtgtccttaaagttaaggactt |
2019043 |
T |
|
| Q |
112 |
caaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggctaaagcaaccccttgtggtaggtcattagagttcactggtgga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||||| ||| || ||| |||||| |||| |
|
|
| T |
2019044 |
caaggcctgatgtatagatggcagtgagtgaattactgtgagctgaatttgaagtactaaagcaatcccttgtggtaagtctttggagctcactgatgga |
2019143 |
T |
|
| Q |
212 |
a |
212 |
Q |
| |
|
| |
|
|
| T |
2019144 |
a |
2019144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 2012163 - 2012251
Alignment:
| Q |
13 |
ataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgtccttaaag |
101 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | |||||| |||| || || ||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
2012163 |
ataggacaacatgttgaattctttagcaaagtttagtgcttcaacagcaaaagcatcaaccaccaaggccacaaggggaatccttaaag |
2012251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 5902047 - 5901924
Alignment:
| Q |
12 |
cataggacaacaagttgaattccttagcaaaatctagtgcatcaattgctaatgcatcaaccaccaaggcaacaaagggtgtccttaaagttaaggactt |
111 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||||||||| || | ||| | ||||||||||| || ||| ||| ||||||||||||||||| || |
|
|
| T |
5902047 |
cataggacaacatgttgaactccttagccaaatctagtgcttcggcagataaagaatcaaccaccagtgccacagggggagtccttaaagttaaggagtt |
5901948 |
T |
|
| Q |
112 |
caaggcctgatgtatagatggcag |
135 |
Q |
| |
|
||| |||||||||| | ||||||| |
|
|
| T |
5901947 |
caatgcctgatgtaaatatggcag |
5901924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University