View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12691_high_10 (Length: 204)
Name: NF12691_high_10
Description: NF12691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12691_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 34433501 - 34433331
Alignment:
| Q |
16 |
atgaacagtgaaaattatttaaactcaaaaagtatgtattatattggataaaataatacgtgtaatgtaaccnnnnnnn-atttgattttctatgcaggt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34433501 |
atgaacagtaaaaattatttaaactcaaaaagtatgtattatattggataaaataatacgtgtaatgtaaccttttttttatttgattttctatgcaggt |
34433402 |
T |
|
| Q |
115 |
aaggcagctcaacaagtaaatattcctattcctgaaggttgtacggatccaaatgccaaaaacttcgaccc |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34433401 |
aaggcagctcaacaagtaaatattcctattcctgaaggttgtacggatccaaatgccaaaaacttcgaccc |
34433331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University