View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12691_high_2 (Length: 322)
Name: NF12691_high_2
Description: NF12691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12691_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 63 - 307
Target Start/End: Original strand, 28791414 - 28791657
Alignment:
| Q |
63 |
catatatagtgatttctttgcctctagaccttccactattatttttgaggcacaaaatatgacatttaccgatatacattcattaatagcctttagccat |
162 |
Q |
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| T |
28791414 |
catatatagtgatttctttgcctctagaccttccactattatttttgaggcacaaaatatgacatttaccgatatacattcattaatagcttttagccat |
28791513 |
T |
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| Q |
163 |
tcaaggtgtgcatcgaatcgcaatattaacagcaataaaggcaaagaaaacgaagtatgttcccgaagactattatagtgcaaccatgtttttctgctat |
262 |
Q |
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| T |
28791514 |
tcaaggtgtgcatcgaatagcaatattaacagcaataaaggcaaag-aaacgaggtatgttcccgaagactattatagtgcaaccatgtttttctgctat |
28791612 |
T |
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| Q |
263 |
tcccctagctagctgctagcatcagtcggatattatactcgccac |
307 |
Q |
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| T |
28791613 |
tcccctggctagctgctagcatcagtcggatattatactcgccac |
28791657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 28787455 - 28787512
Alignment:
| Q |
74 |
atttctttgcctctagaccttccactat--tatttttgaggcacaaaatatgacattt |
129 |
Q |
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| T |
28787455 |
atttctttgcctctagaccttcccctattatatttttgaggcaaacaatatgacattt |
28787512 |
T |
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