View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12691_high_6 (Length: 239)
Name: NF12691_high_6
Description: NF12691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12691_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 13883828 - 13884053
Alignment:
| Q |
1 |
aaaaaatgcaataaattaaccaacgaatttcgggcatgcataggttgtctgaaaagctctatcgggcatgcataggttgtctgtgaaaacctctattgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13883828 |
aaaaaatgcaataaattaaccaacgaatttcgggcatgcataggttgtctgaaaagctctatcgggcatgcataggttgtctgtgaaaacctctattgct |
13883927 |
T |
|
| Q |
101 |
caacgatctatacttaactttcagttaatgtggattgatgaatcggatgttcaccatgttgatataatactatcgtgcctcggaagcaaacttttcattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13883928 |
caacgatctatacttaactttcagttaatgtggattgatgaatcggatgttcaccatgttgatataatactatcgtgcctcggaagcaaacttttcattg |
13884027 |
T |
|
| Q |
201 |
ataaaatagaaatgagggtggaaact |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
13884028 |
ataaaatagaaatgagggtggaaact |
13884053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 14043771 - 14043675
Alignment:
| Q |
67 |
catgcataggttgtctgtgaaaacctctattgctcaacgatctatacttaactttcagttaatgtggattgatgaatcggatgttcaccatgttgat |
163 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||| |||||||| ||| ||||||| ||||||||| || ||||||||||| || ||| |||||| |
|
|
| T |
14043771 |
catgcataggctgtctgtgtaaacctctattgttcaccgatctattattatctttcagataatgtggagtggtgaatcggatgctctccacgttgat |
14043675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 13929581 - 13929485
Alignment:
| Q |
67 |
catgcataggttgtctgtgaaaacctctattgctcaacgatctatacttaactttcagttaatgtggattgatgaatcggatgttcaccatgttgat |
163 |
Q |
| |
|
|||||||||| | |||| | |||||||||||| ||| |||||||| ||| ||||||| ||||||||| || ||||||||||| || ||| |||||| |
|
|
| T |
13929581 |
catgcataggctatctgagtaaacctctattgttcatcgatctattattatctttcagataatgtggagtggtgaatcggatgctctccacgttgat |
13929485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 13476798 - 13476882
Alignment:
| Q |
66 |
gcatgcataggttgtctgtgaaaacctctattgctcaacgatctatacttaactttcagttaatgtggattgatgaatcggatgt |
150 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| | |||| |||||||| ||||||| ||| ||||| || |||||| ||||| |
|
|
| T |
13476798 |
gcatgcataggttgtctgtgtaaacctttattgtactccgatatatacttatctttcagataacgtggagtggtgaatcagatgt |
13476882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University