View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12691_high_7 (Length: 236)
Name: NF12691_high_7
Description: NF12691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12691_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 12710824 - 12711043
Alignment:
| Q |
1 |
ttgtacatcactcattgttaactcgaaatttgaagtcctaaggcgagtcatttcactgatagacctccgtagttcatcaacggagtcactcagctcttcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
12710824 |
ttgtacatcactcattgttaactcgaaatttgaagtcctaaggcgactcatttcaccgatagaccttcgtagttcatccacggagtcactcagctcttcg |
12710923 |
T |
|
| Q |
101 |
acgcaatccttcatagctgcagcctctcttggcttcagcccctggcttttcgagagagttgatatcacagccgatgttgatttcgcggacgcaagagtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12710924 |
acgcaatccttcatagctgcagcctctcttggcttcagcccctggctttttgagagagttgatatcatagccgatgttgatttcgcggacgcaagagtca |
12711023 |
T |
|
| Q |
201 |
cgtttagggccgtaaatgtt |
220 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
12711024 |
cgtttagggccgtacatgtt |
12711043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 12684705 - 12684917
Alignment:
| Q |
1 |
ttgtacatcactcattgttaactcgaaatttgaagtcctaaggcgagtcatttcactgatagacctccgtagttcatcaacggagtcactcagctcttcg |
100 |
Q |
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|
|||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||| ||||||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
12684705 |
ttgtacatcactcattgttagctcaaaatttgaagtcctaagacgactcatttcatcgatagaccttcgtagttcatccacggagtcactcagcacttcg |
12684804 |
T |
|
| Q |
101 |
acgcaatccttcatagctgcagcctctcttggcttcagcccctggcttttcgagagagttgatatcacagccgatgttgatttcgcggacgcaagagtca |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||| | ||| || |||||||| |||| |||||| |||||||| || || |||||||||| |
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| T |
12684805 |
acgcaatccttcatagctgcagcctctcttgggttcaacccctgacctttagatagagttgacatcaaagccgaggttgattttgccgatgcaagagtca |
12684904 |
T |
|
| Q |
201 |
cgtttagggccgt |
213 |
Q |
| |
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|||| |||||||| |
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| T |
12684905 |
cgttgagggccgt |
12684917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 12696205 - 12696417
Alignment:
| Q |
1 |
ttgtacatcactcattgttaactcgaaatttgaagtcctaaggcgagtcatttcactgatagacctccgtagttcatcaacggagtcactcagctcttcg |
100 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||| | ||| |
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| T |
12696205 |
ttgtacatcactcattgttatctcaaaatttgaagtcctaagacgactcatttcatcgatagaccttcgtagttcatcaacggagtcactcagcacctcg |
12696304 |
T |
|
| Q |
101 |
acgcaatccttcatagctgcagcctctcttggcttcagcccctggcttttcgagagagttgatatcacagccgatgttgatttcgcggacgcaagagtca |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||| | ||| | ||| ||||||||||| |||| |||||| |||||||| || || |||||||||| |
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| T |
12696305 |
acgcaatccttcatagctgcagcctctcttgggttcaactgctgacctttagagagagttgacatcaaagccgaggttgattttgccgatgcaagagtca |
12696404 |
T |
|
| Q |
201 |
cgtttagggccgt |
213 |
Q |
| |
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|||| |||||||| |
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|
| T |
12696405 |
cgttgagggccgt |
12696417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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