View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12691_low_1 (Length: 390)
Name: NF12691_low_1
Description: NF12691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12691_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 37690060 - 37689696
Alignment:
| Q |
20 |
gttaacaacggcaccactttttgattaaaaagtaatgtaaaaaccattagcttgnnnnnnntagcagttatggtgttatatatacgattatgtcatccta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37690060 |
gttaacaacggcaccactttttgattaaaaagtaatgtaaaaaccattagcttgaaaaaaatagcagttatggtgttatacatacgattatgtcatccta |
37689961 |
T |
|
| Q |
120 |
gcacaaccatattaacaagtttcggagctgatttggccaaagagaataatgaaccacgcatggcttgtgtgctggatattgtttgaaagacgatagggaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37689960 |
gcacaaccatattaacaagtttcggagctgatttggccaaagagaataatgaaccacgcatggcttgtgtgctggatattgtttgaaagacgatagggaa |
37689861 |
T |
|
| Q |
220 |
tggtaaaggaaaacactcatcttaatggagtgtactataaattgtcttttgctgacatgctttatctctccatttggctgataagactgcttgcaactaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37689860 |
tggtaaaggaaaacactcatcttaatggagtgtactataaattgtcttttgctgacatgctttatctctccatttggctgataagactgcttgcaactaa |
37689761 |
T |
|
| Q |
320 |
atacataaaatcaaatcactcagcattgaaagta--acaaatacatctcttgatgtccatctcat |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||| |
|
|
| T |
37689760 |
atacataaaatcaaatcactcagcattgaaagtaacacaaatacatctcttggtgttcagctcat |
37689696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 26 - 173
Target Start/End: Complemental strand, 38856816 - 38856669
Alignment:
| Q |
26 |
aacggcaccactttttgattaaaaagtaatgtaaaaaccattagcttgnnnnnnntagcagttatggtgttatatatacgattatgtcatcctagcacaa |
125 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38856816 |
aacggcacctctttttgattaaaaaataatgtaaaagccattagcttgaaaaaaatagcagttatggtgttatacatacgattatgtcatcctagcacaa |
38856717 |
T |
|
| Q |
126 |
ccatattaacaagtttcggagctgatttggccaaagagaataatgaac |
173 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38856716 |
ccatattaacaagtttcgcagctgatttggccaaagagaataatgaac |
38856669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 38856655 - 38856573
Alignment:
| Q |
257 |
taaattgtcttttgctgacatgctttatctctccatttggctgataagactgcttgcaactaaatacataaaatcaaatcact |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38856655 |
taaattgtcttttgctgacatgctttatctctccatttggctgataagactgtttgcaactaaatacataaaatcaaatcact |
38856573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 37690100 - 37690059
Alignment:
| Q |
11 |
tcgttcactgttaacaacggcaccactttttgattaaaaagt |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37690100 |
tcgttcactgttaacaacggcaccactttttgattaaaaagt |
37690059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University