View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12691_low_2 (Length: 376)
Name: NF12691_low_2
Description: NF12691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12691_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 34925153 - 34924803
Alignment:
| Q |
17 |
atttcctatataacttctgcaatttgtctatgtttaaacttctgatttttaatcattctccagaattatattcatcaataaagtattcgtattgtgcaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925153 |
atttcctatataacttctgcaatttgtctatgtttaaacttctggttttgaatcattctccagaattatattcatcaataaagtattcgtattgtgcaat |
34925054 |
T |
|
| Q |
117 |
ctgtttgtttctgttcggtgcctgattctatcagtattctaatcgcctctagcaagggttctggattgttattttgaccacaatttatagatgaattgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925053 |
ctgtttgtttctgttcggtgcctgattctatcagtattctaatcgcctctagcaagggttctggattgttattttgaccacaatttatagatgaattgtt |
34924954 |
T |
|
| Q |
217 |
aggtggcttctaaggtgagggctctactctagtaagtccctcacccatgtaccgtctattataacacttggatgtaatgtaaaattattggaaatttgtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34924953 |
aggtggcttctaaggtgagggctctactctagtaagtccctcacccatgtaccgtctattataacacttggatgtaatgtaaaattattggaaatttgtt |
34924854 |
T |
|
| Q |
317 |
aatcatcttgcatgcaaagggcgtct-aaactcatacatggaagctctgtg |
366 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
34924853 |
aatcatcttgcatgcaaagggcgtctaaaactcatacatggaagctttgtg |
34924803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 34929518 - 34929171
Alignment:
| Q |
17 |
atttcctatataacttctgcaatttgtctatgtttaaacttctgatttttaatcattctccagaattatattcatcaataaagtattcgtattgtgcaat |
116 |
Q |
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||||||||||| ||| ||||||||||||||||| || ||||| |||| ||| ||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
34929518 |
atttcctatatgactactgcaatttgtctatgtgtagtattctggttttgaattattctccagaattattgtcatcaa--aagtattcgtattgtgcaat |
34929421 |
T |
|
| Q |
117 |
ctgtttgtttctgttcggtgcctgattctatcagtattctaatcgcctctagcaagggttctggattgttattttgaccacaatttatagatgaattgtt |
216 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
34929420 |
ctgtttgtttctgttcgatgcctgattctatcagtattctaatcacatcttgcaagggttctggattattatcttgaccacaatttatagatgaattgtt |
34929321 |
T |
|
| Q |
217 |
aggtggcttctaaggtgagggctctactctagtaagtccctcacccatgtaccgtctattataacacttggatgtaatgtaaaattattggaaatttgtt |
316 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |
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| T |
34929320 |
agctggcttctaaggtgagggatctactctagtaagtccctcccccatgtaccgtctattgtaacacttggatgtaatggaaaattattggaaatgtgtt |
34929221 |
T |
|
| Q |
317 |
aatcatcttgcatgcaaagggcgtctaaactcatacatggaagctctgtg |
366 |
Q |
| |
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|||| |||||||| ||||| ||||||||||||| ||||||||| |||| |
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|
| T |
34929220 |
aatcgacttgcatgggaagggggtctaaactcatatatggaagctttgtg |
34929171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 34935055 - 34934941
Alignment:
| Q |
20 |
tcctatataacttctgcaatttgtctatgtttaaacttctgatttttaatcattctccagaattatattcatcaataaagtattcgtattgtgcaatctg |
119 |
Q |
| |
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|||||||| ||| ||||||||||||||||| || ||||| |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34935055 |
tcctatatgactactgcaatttgtctatgtgtagtattctggttttgaattattatccagaattatattcatcaataaagtattcgtattgtgcaatctg |
34934956 |
T |
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| Q |
120 |
tttgtttctgttcgg |
134 |
Q |
| |
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||||||||||||||| |
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|
| T |
34934955 |
tttgtttctgttcgg |
34934941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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