View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12691_low_3 (Length: 351)

Name: NF12691_low_3
Description: NF12691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12691_low_3
NF12691_low_3
[»] chr1 (4 HSPs)
chr1 (1-351)||(35925346-35925696)
chr1 (240-271)||(48064189-48064220)
chr1 (240-272)||(2194485-2194517)
chr1 (239-271)||(11218104-11218136)
[»] chr3 (4 HSPs)
chr3 (239-271)||(31762205-31762237)
chr3 (240-273)||(43079653-43079686)
chr3 (243-271)||(19679464-19679492)
chr3 (239-271)||(46434751-46434783)
[»] chr8 (4 HSPs)
chr8 (240-271)||(31751715-31751746)
chr8 (239-271)||(6526383-6526415)
chr8 (239-271)||(8499086-8499118)
chr8 (239-271)||(31118867-31118899)
[»] chr5 (5 HSPs)
chr5 (240-271)||(5559610-5559641)
chr5 (240-271)||(11715018-11715049)
chr5 (246-276)||(8334464-8334494)
chr5 (240-277)||(14675053-14675090)
chr5 (240-277)||(32927977-32928014)
[»] chr4 (4 HSPs)
chr4 (240-271)||(19039661-19039692)
chr4 (240-271)||(54214895-54214926)
chr4 (241-271)||(47946110-47946140)
chr4 (239-271)||(11155556-11155588)
[»] chr7 (2 HSPs)
chr7 (242-271)||(32156891-32156920)
chr7 (239-271)||(46945774-46945806)
[»] chr6 (1 HSPs)
chr6 (242-271)||(769045-769074)
[»] chr2 (2 HSPs)
chr2 (240-277)||(12140446-12140483)
chr2 (239-272)||(39621863-39621896)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 35925346 - 35925696
Alignment:
Q  1 tatgtataagtaacctctcacagacacacgcgacacacataagaaaagggtcaagtagttaaccacataattgattttgggggatataatcatttaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35925346 tatgtataagtaacctctcacagacacacgcgacacacataagaaaagggtcaagtagttaaccacataattgattttgggggatataatcatttaattg 35925445  T
Q  101 tcttgtacttttcagtcctctctcattcttttcctcaaacatagcaaagaactcaaggtaggcaacaggttcaacttatttcagacaagatcacacaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35925446 tcttgtacttttcagtcctctctcattcttttcctcaaacatagcaaagaactcaaggtaggcaacaggttcaacttatttcagacaagatcacacaatt 35925545  T
Q  201 catatataatttattttctgctagagtcaaggaaatctttgtttggataaacaacttaatttgcagcttatgtcataggcactcacttatcatataaaag 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35925546 catatataatttattttctgctagactcaaggaaatctttgtttggataaacaacttaatttgcagcttatgtcataggcactcacttatcatataaaag 35925645  T
Q  301 gcgcttaagataaatgaagtcgatctattttcatataaactataagttgtt 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35925646 gcgcttaagataaatgaagtcgatctattttcatataaactataagttgtt 35925696  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 271
Target Start/End: Original strand, 48064189 - 48064220
Alignment:
Q  240 tgtttggataaacaacttaatttgcagcttat 271  Q
    ||||||||||||||||||||||||||||||||    
T  48064189 tgtttggataaacaacttaatttgcagcttat 48064220  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 2194517 - 2194485
Alignment:
Q  240 tgtttggataaacaacttaatttgcagcttatg 272  Q
    |||||||||||||| ||||||||||||||||||    
T  2194517 tgtttggataaacagcttaatttgcagcttatg 2194485  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 11218136 - 11218104
Alignment:
Q  239 ttgtttggataaacaacttaatttgcagcttat 271  Q
    ||||||||||||||||| |||||||||||||||    
T  11218136 ttgtttggataaacaacataatttgcagcttat 11218104  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 31762205 - 31762237
Alignment:
Q  239 ttgtttggataaacaacttaatttgcagcttat 271  Q
    |||||||||||||||||||||||||||||||||    
T  31762205 ttgtttggataaacaacttaatttgcagcttat 31762237  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 43079653 - 43079686
Alignment:
Q  240 tgtttggataaacaacttaatttgcagcttatgt 273  Q
    |||||||||||||| |||||||||||||||||||    
T  43079653 tgtttggataaacagcttaatttgcagcttatgt 43079686  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 19679492 - 19679464
Alignment:
Q  243 ttggataaacaacttaatttgcagcttat 271  Q
    |||||||||||||||||||||||||||||    
T  19679492 ttggataaacaacttaatttgcagcttat 19679464  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 46434783 - 46434751
Alignment:
Q  239 ttgtttggataaacaacttaatttgcagcttat 271  Q
    |||||||||||||||||||| ||||||||||||    
T  46434783 ttgtttggataaacaacttattttgcagcttat 46434751  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 271
Target Start/End: Complemental strand, 31751746 - 31751715
Alignment:
Q  240 tgtttggataaacaacttaatttgcagcttat 271  Q
    ||||||||||||||||||||||||||||||||    
T  31751746 tgtttggataaacaacttaatttgcagcttat 31751715  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 6526415 - 6526383
Alignment:
Q  239 ttgtttggataaacaacttaatttgcagcttat 271  Q
    ||||||||||||||| |||||||||||||||||    
T  6526415 ttgtttggataaacagcttaatttgcagcttat 6526383  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 8499086 - 8499118
Alignment:
Q  239 ttgtttggataaacaacttaatttgcagcttat 271  Q
    ||||||||||||||||||||||||||| |||||    
T  8499086 ttgtttggataaacaacttaatttgcaacttat 8499118  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 31118899 - 31118867
Alignment:
Q  239 ttgtttggataaacaacttaatttgcagcttat 271  Q
    |||||||||||||||||||||| ||||||||||    
T  31118899 ttgtttggataaacaacttaatgtgcagcttat 31118867  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 271
Target Start/End: Original strand, 5559610 - 5559641
Alignment:
Q  240 tgtttggataaacaacttaatttgcagcttat 271  Q
    ||||||||||||||||||||||||||||||||    
T  5559610 tgtttggataaacaacttaatttgcagcttat 5559641  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 271
Target Start/End: Complemental strand, 11715049 - 11715018
Alignment:
Q  240 tgtttggataaacaacttaatttgcagcttat 271  Q
    ||||||||||||||||||||||||||||||||    
T  11715049 tgtttggataaacaacttaatttgcagcttat 11715018  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 276
Target Start/End: Original strand, 8334464 - 8334494
Alignment:
Q  246 gataaacaacttaatttgcagcttatgtcat 276  Q
    |||||||||||||||||||||||||||||||    
T  8334464 gataaacaacttaatttgcagcttatgtcat 8334494  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 14675090 - 14675053
Alignment:
Q  240 tgtttggataaacaacttaatttgcagcttatgtcata 277  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  14675090 tgtttggacaaacaacttaatttgcagcttatggcata 14675053  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 32927977 - 32928014
Alignment:
Q  240 tgtttggataaacaacttaatttgcagcttatgtcata 277  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  32927977 tgtttgaataaacaacttaatttgcagcttatatcata 32928014  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 271
Target Start/End: Original strand, 19039661 - 19039692
Alignment:
Q  240 tgtttggataaacaacttaatttgcagcttat 271  Q
    ||||||||||||||||||||||||||||||||    
T  19039661 tgtttggataaacaacttaatttgcagcttat 19039692  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 271
Target Start/End: Original strand, 54214895 - 54214926
Alignment:
Q  240 tgtttggataaacaacttaatttgcagcttat 271  Q
    ||||||||||||||||||||||||||||||||    
T  54214895 tgtttggataaacaacttaatttgcagcttat 54214926  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 47946110 - 47946140
Alignment:
Q  241 gtttggataaacaacttaatttgcagcttat 271  Q
    |||||||||||||||||||||||||||||||    
T  47946110 gtttggataaacaacttaatttgcagcttat 47946140  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 11155588 - 11155556
Alignment:
Q  239 ttgtttggataaacaacttaatttgcagcttat 271  Q
    |||||||||||||||||||| ||||||||||||    
T  11155588 ttgtttggataaacaacttactttgcagcttat 11155556  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 32156891 - 32156920
Alignment:
Q  242 tttggataaacaacttaatttgcagcttat 271  Q
    ||||||||||||||||||||||||||||||    
T  32156891 tttggataaacaacttaatttgcagcttat 32156920  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 46945774 - 46945806
Alignment:
Q  239 ttgtttggataaacaacttaatttgcagcttat 271  Q
    |||||||||||||||||||| ||||||||||||    
T  46945774 ttgtttggataaacaacttagtttgcagcttat 46945806  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 769045 - 769074
Alignment:
Q  242 tttggataaacaacttaatttgcagcttat 271  Q
    ||||||||||||||||||||||||||||||    
T  769045 tttggataaacaacttaatttgcagcttat 769074  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 12140446 - 12140483
Alignment:
Q  240 tgtttggataaacaacttaatttgcagcttatgtcata 277  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  12140446 tgtttggataaacaacttattttgcagcttatatcata 12140483  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 39621863 - 39621896
Alignment:
Q  239 ttgtttggataaacaacttaatttgcagcttatg 272  Q
    |||||||||||||||||||| |||||||||||||    
T  39621863 ttgtttggataaacaacttattttgcagcttatg 39621896  T

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