View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12692_high_1 (Length: 518)
Name: NF12692_high_1
Description: NF12692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12692_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 502
Target Start/End: Original strand, 39111220 - 39111712
Alignment:
| Q |
9 |
cagagaggcaagccacttcatggcccttttgttgcagcattgcttaatgacctttttggcattcaagctcgaggtgggtgtgcttgtgctggaccttatg |
108 |
Q |
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| T |
39111220 |
cagagaggcaagccacttcatggcccttttgttgcagcattgcttaatgacctttttggcattcaagctcgaggtgggtgtgcttgtgctggaccttatg |
39111319 |
T |
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| Q |
109 |
gacatgaattactcaacatcaataaatctcaatcactttctattagatcagctgttcaagaggtgaaaaatcatcttatttccttgatattttttaggtt |
208 |
Q |
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| T |
39111320 |
gacatgaattactcaacatcaataaatctcaatcacttgctattagatcagctgttcaagaggtgaaaaatcatcttatttc-ttgatattttttaggtt |
39111418 |
T |
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| Q |
209 |
aaatgtttctttaatctatatcaagttttaagacttttcaatgcatttaaaagaaaaactaaaattgtttattgttttggatattttgctacagggctat |
308 |
Q |
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| T |
39111419 |
aaatgtttctttaatctatatgaagttttaagacttttcaatgcatttaaaagaaaaactaaaattgtttattgttttggatattttgctacagggctat |
39111518 |
T |
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| Q |
309 |
attggagtaaaacctggatggacaagagttagttttccttattacatgagtgaaagtgattttgattacattttaagtgcaatagagtttttagctgtat |
408 |
Q |
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| T |
39111519 |
attggagtaaaacctggatggacaagagttagttttccttattacatgagtgaaagtgattttgattacattttaagtgcaatagagtttttagctgtat |
39111618 |
T |
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| Q |
409 |
atggtcaaaggttctttcctctatatagcttcaacttgaggaatggaagttggagaatgaagactgagaaatttgaggcagtaaacaaggaaga |
502 |
Q |
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| T |
39111619 |
atggtcaaaggttctttcctctatatagcttcaacttgaggaatggaagttggacaatgaagactgagaaatttgaggcagtaaacaaggaaga |
39111712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 39105215 - 39105351
Alignment:
| Q |
36 |
tttgttgcagcattgcttaatgacctttttggcattcaagctcgaggtgggtgtgcttgtgctggaccttatggacatgaattactcaacatcaataaat |
135 |
Q |
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| T |
39105215 |
tttgttgcaacattgttaaacgatctctttggaatacaatctcgaggtgggtgtgcttgtgctggaccttacggacatgatttgctcaacatcaatgaat |
39105314 |
T |
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| Q |
136 |
ctcaatcactttctattagatcagctgttcaagaggt |
172 |
Q |
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| T |
39105315 |
ctcaatcgcttgccgttagatcagcaattcaagaggt |
39105351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 447
Target Start/End: Original strand, 39105562 - 39105699
Alignment:
| Q |
310 |
ttggagtaaaacctggatggacaagagttagttttccttattacatgagtgaaagtgattttgattacattttaagtgcaatagagtttttagctgtata |
409 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||||||| ||| || ||||| | |||||||| | | ||||||||| || || |||| |
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| T |
39105562 |
ttggtgtaaaacccggatggaccagagttagttttccttattacatggatgaggaggaatttgagttcattttaacttccatagagtttgtatctatata |
39105661 |
T |
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| Q |
410 |
tggtcaaaggttctttcctctatatagcttcaacttga |
447 |
Q |
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| T |
39105662 |
tggtcaacggttccttccactatacaacttcaatttga |
39105699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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