View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12692_high_2 (Length: 440)
Name: NF12692_high_2
Description: NF12692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12692_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 24358661 - 24358268
Alignment:
| Q |
18 |
aatttttcaatgagaagaagtcataaaacttgctctcctgtggcaaaaagattccaaaaaatggttgtcacaacatagagacatgctgttatagttagga |
117 |
Q |
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| T |
24358661 |
aatttttcaatgagaagaagtcataaaacttgctctcctgtggcaaaaagattccaaaaaatggttgtcacaacatagagacatgctgttatagttagga |
24358562 |
T |
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| Q |
118 |
atgcttgaaatgatcccaaccattgtacaaaataaccagttccaattgtgcttatgatagctgctaaagttccagctgaatttgatattcctgtaatagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358561 |
atgcttgaaatgatcccaaccattgtacaaaataaccagttccaattgtgcttatgatagctgctaaagttccagctgaatttgatattcctgtaatagt |
24358462 |
T |
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| Q |
218 |
ttctttaatgttaatacatgatccatgatgtaaaaacaacgacttaatttagaaaaagggaagacattccaaacacattttcttaagttcttaccatgta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358461 |
ttctttaatgttaatacatgatccatgatgtaaaaacaacgacttaatttagaaaaagggaagacattccaaacacattttcttaagttcttaccatgta |
24358362 |
T |
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| Q |
318 |
aaattcctgcatactgtggagcaatgtcctgaatatgtaaaatgtgaaaggttactcatatatttccaagttcatgaaatgtcataaatataat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
24358361 |
aaattcctgcatactgtggagcaatgtcctgaatatgtaaaatgtgaaaggttactgatatatttctaagttcatgaaatgtcataaatataat |
24358268 |
T |
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