View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12692_high_3 (Length: 431)

Name: NF12692_high_3
Description: NF12692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12692_high_3
NF12692_high_3
[»] chr6 (5 HSPs)
chr6 (127-415)||(3564781-3565073)
chr6 (1-38)||(3564601-3564638)
chr6 (159-266)||(3815104-3815212)
chr6 (170-266)||(9161134-9161232)
chr6 (47-77)||(3564701-3564731)
[»] chr8 (5 HSPs)
chr8 (164-266)||(45071270-45071372)
chr8 (164-266)||(13160707-13160809)
chr8 (165-264)||(5135318-5135418)
chr8 (164-266)||(36720801-36720904)
chr8 (164-266)||(39461021-39461126)
[»] chr4 (8 HSPs)
chr4 (164-266)||(5648264-5648366)
chr4 (178-266)||(25629068-25629157)
chr4 (170-266)||(30639391-30639487)
chr4 (164-266)||(7385503-7385606)
chr4 (164-235)||(11054206-11054276)
chr4 (164-266)||(6430653-6430755)
chr4 (164-266)||(40915834-40915936)
chr4 (164-253)||(9832353-9832441)
[»] chr2 (4 HSPs)
chr2 (164-266)||(14444734-14444836)
chr2 (170-266)||(23397777-23397872)
chr2 (164-243)||(12023969-12024048)
chr2 (164-264)||(8455345-8455446)
[»] chr7 (10 HSPs)
chr7 (164-245)||(19426937-19427019)
chr7 (164-264)||(35334845-35334944)
chr7 (183-266)||(38604551-38604634)
chr7 (183-266)||(40463901-40463984)
chr7 (164-266)||(18512480-18512582)
chr7 (170-243)||(23419724-23419798)
chr7 (170-243)||(33871960-33872033)
chr7 (170-246)||(2662982-2663057)
chr7 (170-266)||(32758272-32758367)
chr7 (171-243)||(42476885-42476956)
[»] chr1 (5 HSPs)
chr1 (159-266)||(46247980-46248088)
chr1 (164-243)||(32632607-32632686)
chr1 (164-280)||(18724558-18724675)
chr1 (183-243)||(31382264-31382324)
chr1 (170-202)||(45812627-45812659)
[»] chr5 (4 HSPs)
chr5 (164-243)||(41014324-41014403)
chr5 (181-266)||(7097787-7097872)
chr5 (164-264)||(24448895-24448996)
chr5 (164-252)||(35710318-35710405)
[»] scaffold0036 (1 HSPs)
scaffold0036 (164-247)||(35063-35148)
[»] scaffold0187 (2 HSPs)
scaffold0187 (164-253)||(10090-10178)
scaffold0187 (164-253)||(20418-20506)
[»] chr3 (1 HSPs)
chr3 (170-266)||(22609799-22609895)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 127 - 415
Target Start/End: Original strand, 3564781 - 3565073
Alignment:
Q  127 gaggagcctacacaacggtaaaagttgattaaaaatatcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatac 226  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3564781 gaggagcctacacaacggtaaaagttgattaaaaatgtcacgagttcaagttctgaaaatagtctcttgtgtaaaaatagaataagactgtgtgcaatac 3564880  T
Q  227 accagatggtgagaccctttctcggactctacgtatgcggttgccttgtgcac----ctgtttctttgtttgctacaattatattttattttgttaacca 322  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||     
T  3564881 accagatggtgagaccctttctcggactctacgtatgtggttgccttgtgcaccagactgtttctttgtttgctacaattatattttattttgttaacct 3564980  T
Q  323 tttacatgccatatatctttagctcaatatgagatcttgtaatgccgtttgagctgaattatgctttccccgtatggaaatcacccaagatct 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3564981 tttacatgccatatatctttagctcaatatgagatcttgtaatgccgtttgagctgaattatggtttccccgtatggaaatcacccaagatct 3565073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3564601 - 3564638
Alignment:
Q  1 ccgaaacaagggagagtgaaatgactgtgaatggtatc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3564601 ccgaaacaagggagagtgaaatgactgtgaatggtatc 3564638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 3815212 - 3815104
Alignment:
Q  159 aaatatcacgagttcaagttctgaaaacagtctcttgtgtaaaaa-tagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactcta 257  Q
    |||| ||||| |||||||| ||| |||||| || ||||||||||| ||   || ||||| || |||||||||| |||||| ||||||||| || || |||    
T  3815212 aaatgtcacgggttcaagtcctggaaacagactattgtgtaaaaaatatggtacgactgcgtacaatacaccaaatggtgggaccctttcccgaacccta 3815113  T
Q  258 cgtatgcgg 266  Q
    |||||||||    
T  3815112 cgtatgcgg 3815104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 9161134 - 9161232
Alignment:
Q  170 gttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacacca--gatggtgagaccctttctcggactctacgtatgcgg 266  Q
    |||||||| ||| |||||| |||||||||||||| ||| |||| ||| || ||||||| ||   |||||| ||||| ||||||||| || |||||||||    
T  9161134 gttcaagtcctggaaacagcctcttgtgtaaaaacagagtaaggctgcgtacaatacatcaataatggtgggaccccttctcggaccctgcgtatgcgg 9161232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 77
Target Start/End: Original strand, 3564701 - 3564731
Alignment:
Q  47 tcaagtgtaacgatgttttaaaccagtgaag 77  Q
    |||||||||||||||||||||||||||||||    
T  3564701 tcaagtgtaacgatgttttaaaccagtgaag 3564731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 45071270 - 45071372
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatg 263  Q
    ||||| |||||||||||| |||||| |||||||||||||| ||  |||| ||| || |||||||||| |||||| ||||| ||| |||||  | ||||||    
T  45071270 tcacgggttcaagttctggaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccttgcgtatg 45071369  T
Q  264 cgg 266  Q
    |||    
T  45071370 cgg 45071372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 13160707 - 13160809
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatg 263  Q
    ||||| |||||||| ||  |||||| |||||||||||||| ||  |||| ||| || |||||||||| |||||| ||||| ||| ||||| || ||||||    
T  13160707 tcacgggttcaagtcctagaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatg 13160806  T
Q  264 cgg 266  Q
    |||    
T  13160807 cgg 13160809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 5135418 - 5135318
Alignment:
Q  165 cacgagttcaagttctgaaaacagtctcttgtgta-aaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatg 263  Q
    |||| |||||||| ||| |||||| |||||||||| |||| ||  |||| |||||| |||||||||| |||||| ||||| ||| ||||| || ||||||    
T  5135418 cacgggttcaagtcctggaaacagcctcttgtgtaaaaaagagggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatg 5135319  T
Q  264 c 264  Q
    |    
T  5135318 c 5135318  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 36720801 - 36720904
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgt-aaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtat 262  Q
    ||||| |||||||| ||| |||||| ||||||||| ||||| ||  |||| ||| || |||||||||| |||||| ||||| ||| ||||| || |||||    
T  36720801 tcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtat 36720900  T
Q  263 gcgg 266  Q
    ||||    
T  36720901 gcgg 36720904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 39461126 - 39461021
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgta-aaaatagaataagactgtgtgcaatacacca--gatggtgagaccctttctcggactctacgt 260  Q
    ||||| |||||||| ||| |||||| |||||||||| |||| ||| |||| ||| || ||||||||||   |||||||||||| ||| ||||| || |||    
T  39461126 tcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagagtaaggctgcgtacaatacaccaataatggtgagaccccttcccggaccctgcgt 39461027  T
Q  261 atgcgg 266  Q
    ||||||    
T  39461026 atgcgg 39461021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 5648264 - 5648366
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatg 263  Q
    ||||| |||||||| ||| |||||| |||||||||||||| ||  |||| ||| || |||||||||| |||||| ||||| ||| ||||| || ||||||    
T  5648264 tcacgggttcaagtcctggaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatg 5648363  T
Q  264 cgg 266  Q
    |||    
T  5648364 cgg 5648366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 25629068 - 25629157
Alignment:
Q  178 tctgaaaacagtctcttgtgt-aaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatgcgg 266  Q
    |||| |||||||||||||||| ||||||||  |||| |||||| |||||||||| |||||| ||||| ||| ||||| |||| |||||||    
T  25629068 tctggaaacagtctcttgtgtaaaaaatagggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctacatatgcgg 25629157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 30639391 - 30639487
Alignment:
Q  170 gttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatgcgg 266  Q
    |||||||| ||| |||||| |||||||||||||| ||  |||| ||| || |||||||||| |||||||||||| ||| ||||| || | |||||||    
T  30639391 gttcaagtcctggaaacagactcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgagaccccttcccggaccctgcatatgcgg 30639487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 7385606 - 7385503
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaa-tagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtat 262  Q
    ||||| |||||||  ||| |||||| ||| |||||||||| |||  ||||  |||||||||||||||| |||||| ||||||||| ||||| ||  ||||    
T  7385606 tcacgggttcaagccctggaaacagcctcatgtgtaaaaaatagggtaaggttgtgtgcaatacaccaaatggtgggaccctttcccggaccctgtgtat 7385507  T
Q  263 gcgg 266  Q
    ||||    
T  7385506 gcgg 7385503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 11054276 - 11054206
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatgg 235  Q
    ||||| |||||||| |||||||||||||||||||| |||| ||  |||||||| || |||||||||| ||||    
T  11054276 tcacgggttcaagtcctgaaaacagtctcttgtgt-aaaacagggtaagactgcgtacaatacaccaaatgg 11054206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 6430755 - 6430653
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatg 263  Q
    ||||| ||||||||  || |||||| |||||||||||||| ||  |||| ||| || |||||||||| |||||| ||||  ||| ||||| || ||||||    
T  6430755 tcacgggttcaagtcatggaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccacttcccggaccctgcgtatg 6430656  T
Q  264 cgg 266  Q
    |||    
T  6430655 cgg 6430653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 40915834 - 40915936
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatg 263  Q
    ||||| |||||||| ||| |||||| |||||||||||||| |   |||| ||| || |||||||||| |||||| || || ||| ||||| || ||||||    
T  40915834 tcacgggttcaagtcctggaaacagcctcttgtgtaaaaacaaggtaaggctgcgtacaatacaccaaatggtgggagcccttcccggaccctgcgtatg 40915933  T
Q  264 cgg 266  Q
    |||    
T  40915934 cgg 40915936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 9832441 - 9832353
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggac 253  Q
    ||||| |||||||| |||||||||| ||||||||| |||| ||  |||| ||| || |||||||||| |||||| ||||| ||| |||||    
T  9832441 tcacgggttcaagtcctgaaaacagcctcttgtgt-aaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggac 9832353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 14444734 - 14444836
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatg 263  Q
    ||||| |||||||| ||| |||||| |||||||||||||| ||  |||| |||||| | |||||||| |||||| ||||| ||| ||||| || ||||||    
T  14444734 tcacgggttcaagtcctggaaacagcctcttgtgtaaaaacagggtaaggctgtgtacgatacaccaaatggtgggaccccttcccggaccctgcgtatg 14444833  T
Q  264 cgg 266  Q
    |||    
T  14444834 cgg 14444836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 23397777 - 23397872
Alignment:
Q  170 gttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatgcgg 266  Q
    |||||||| ||| |||||| ||||||||| |||||||  |||| ||  || |||||||||| |||||| ||||| ||||||||| |||| |||||||    
T  23397777 gttcaagtcctggaaacagcctcttgtgt-aaaatagggtaaggctacgtacaatacaccaaatggtgggaccccttctcggaccctacatatgcgg 23397872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 12024048 - 12023969
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccc 243  Q
    ||||| |||||||| ||| |||||| |||||||||||||| ||  |||| ||| || |||||||||| |||||| |||||    
T  12024048 tcacgggttcaagtcctggaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccc 12023969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 8455446 - 8455345
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaa-atagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtat 262  Q
    ||||| |||||||| ||| |||||| ||||||||||||| | ||  |||| ||| || |||||||||| |||||| ||||| ||| ||||| || |||||    
T  8455446 tcacgggttcaagtcctggaaacagcctcttgtgtaaaacacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtat 8455347  T
Q  263 gc 264  Q
    ||    
T  8455346 gc 8455345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 19427019 - 19426937
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgta-aaaatagaataagactgtgtgcaatacaccagatggtgagaccctt 245  Q
    ||||| |||||||| ||| |||||| |||||||||| |||||||  |||||||| || |||||||||| |||||| |||||||    
T  19427019 tcacgggttcaagtcctggaaacagcctcttgtgtaaaaaatagggtaagactgcgtacaatacaccaaatggtgggaccctt 19426937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 35334944 - 35334845
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatg 263  Q
    |||||||||||||| ||| |||||||||| |||  ||||| ||  ||||||||||| |||||||||  |||||| ||||| ||| ||||| || ||||||    
T  35334944 tcacgagttcaagtcctggaaacagtctcgtgta-aaaaacagggtaagactgtgtacaatacaccgaatggtgggaccccttcccggaccctgcgtatg 35334846  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 38604551 - 38604634
Alignment:
Q  183 aaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatgcgg 266  Q
    |||||| |||||||||||||| ||  |||| ||| || |||||||||| |||||||||||| ||  ||||| || |||||||||    
T  38604551 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgagacccctttccggaccctgcgtatgcgg 38604634  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 40463901 - 40463984
Alignment:
Q  183 aaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatgcgg 266  Q
    |||||||||||||||||||||  |  |||| ||| ||  ||||||||| |||||| ||||| ||||||||| || |||||||||    
T  40463901 aaacagtctcttgtgtaaaaactgggtaaggctgcgtataatacaccaaatggtgggaccccttctcggaccctgcgtatgcgg 40463984  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 18512582 - 18512480
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatg 263  Q
    ||||| |||||||| ||| |||||   ||||||||||||||||  |||| ||| || |||||||||  |||||| ||||| ||| ||||| || ||||||    
T  18512582 tcacgggttcaagtcctggaaacaacatcttgtgtaaaaatagggtaaggctgcgtacaatacaccgaatggtgggaccccttcccggaccctgcgtatg 18512483  T
Q  264 cgg 266  Q
    |||    
T  18512482 cgg 18512480  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 23419798 - 23419724
Alignment:
Q  170 gttcaagttctgaaaacagtctcttgtgta-aaaatagaataagactgtgtgcaatacaccagatggtgagaccc 243  Q
    |||||||||||| |||||| |||||||||| |||| ||  |||||||| || |||||||||| |||||| |||||    
T  23419798 gttcaagttctggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggaccc 23419724  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 33872033 - 33871960
Alignment:
Q  170 gttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccc 243  Q
    |||||||| ||| |||||  |||||||||||||| || ||||| ||| || |||||||||| |||||| |||||    
T  33872033 gttcaagtcctggaaacaacctcttgtgtaaaaacaggataaggctgcgtacaatacaccaaatggtgggaccc 33871960  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 2663057 - 2662982
Alignment:
Q  170 gttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagacccttt 246  Q
    |||||||| ||| |||||| ||||||||| |||||||  |||| ||| || |||||||||| |||||| ||||||||    
T  2663057 gttcaagtcctggaaacagcctcttgtgt-aaaatagggtaaggctgcgtacaatacaccaaatggtgggacccttt 2662982  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 32758272 - 32758367
Alignment:
Q  170 gttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatgcgg 266  Q
    |||||||| ||| |||||| ||||||||| |||| ||  |||| |||||| |||||||||| |||||| ||||| ||| ||||| || | |||||||    
T  32758272 gttcaagtcctggaaacagcctcttgtgt-aaaacagggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgg 32758367  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 42476885 - 42476956
Alignment:
Q  171 ttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccc 243  Q
    ||||||||||| ||||||||||||||||||||  ||  |||| ||| || |||||||||| |||||| |||||    
T  42476885 ttcaagttctggaaacagtctcttgtgtaaaacaag-gtaaggctgcgtacaatacaccaaatggtgggaccc 42476956  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 46248088 - 46247980
Alignment:
Q  159 aaatatcacgagttcaagttctgaaaacagtctcttgtgta-aaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactcta 257  Q
    |||| ||||| ||||||||  || |||||| |||||||||| |||| ||  |||||||| || |||||||||| |||||| ||||| ||| ||||| ||     
T  46248088 aaatgtcacgggttcaagtcttggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggaccccttcccggaccctg 46247989  T
Q  258 cgtatgcgg 266  Q
    |||||||||    
T  46247988 cgtatgcgg 46247980  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 32632686 - 32632607
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccc 243  Q
    ||||| |||||||| ||| |||||| |||||||||||||| ||  |||| ||| || |||||||||| |||||| |||||    
T  32632686 tcacgggttcaagtcctggaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccc 32632607  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 280
Target Start/End: Complemental strand, 18724675 - 18724558
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgta-aaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtat 262  Q
    ||||| |||||||| ||| |||||| |||||||||| |||| ||  |||| |||||| |||||||||| ||  || ||||| ||| ||||| |||| |||    
T  18724675 tcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgtgtacaatacaccaaatcttgggaccccttcccggaccctacatat 18724576  T
Q  263 gcggttgccttgtgcacc 280  Q
    ||||  || |||||||||    
T  18724575 gcgggagctttgtgcacc 18724558  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 31382324 - 31382264
Alignment:
Q  183 aaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccc 243  Q
    |||||| |||||||||||||| || ||||| ||| || |||||||||| |||||| |||||    
T  31382324 aaacagcctcttgtgtaaaaacaggataaggctgcgtacaatacaccaaatggtgggaccc 31382264  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 45812659 - 45812627
Alignment:
Q  170 gttcaagttctgaaaacagtctcttgtgtaaaa 202  Q
    |||||||| ||||||||||||||||||||||||    
T  45812659 gttcaagtcctgaaaacagtctcttgtgtaaaa 45812627  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 41014324 - 41014403
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccc 243  Q
    ||||| |||||||| ||| |||||| |||||||||||||| ||  |||| ||| || |||||||||| |||||| |||||    
T  41014324 tcacgggttcaagtcctggaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccc 41014403  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 7097872 - 7097787
Alignment:
Q  181 gaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatgcgg 266  Q
    |||||||| |||||||||||||| ||  ||||  || || |||||||||| |||||||||||| ||| || || || |||||||||    
T  7097872 gaaaacagcctcttgtgtaaaaacagggtaaggttgcgtacaatacaccaaatggtgagaccccttcccgaaccctgcgtatgcgg 7097787  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 264
Target Start/End: Original strand, 24448895 - 24448996
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgt-aaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtat 262  Q
    ||||| |||||||| ||| |||||| || |||||| ||||||||  |||| ||| || |||||||||| |||||| ||||| ||| ||||| || |||||    
T  24448895 tcacgggttcaagtcctggaaacagccttttgtgtaaaaaatagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtat 24448994  T
Q  263 gc 264  Q
    ||    
T  24448995 gc 24448996  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 35710318 - 35710405
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcgga 252  Q
    ||||| |||||||| ||| |||||| ||||||||| |||||||  |||| ||| || |||||||||| |||||| ||||| ||| ||||    
T  35710318 tcacgggttcaagtcctggaaacagcctcttgtgt-aaaatagggtaaggctgcgttcaatacaccaaatggtgggaccccttcccgga 35710405  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 35148 - 35063
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctctt--gtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttc 247  Q
    ||||| |||||||| ||||||||||||||||  |||| |||| ||  |||| ||| || |||||||||| |||||| |||||||||    
T  35148 tcacgggttcaagtcctgaaaacagtctcttgtgtgtgaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccctttc 35063  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 10178 - 10090
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggac 253  Q
    ||||| |||||||| ||| |||||| ||||||||| |||| ||| |||||||| || |||||||||| || ||| ||||| ||| |||||    
T  10178 tcacgggttcaagtcctggaaacagcctcttgtgt-aaaacagagtaagactgcgtacaatacaccaaatagtgggaccccttcccggac 10090  T

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Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 20506 - 20418
Alignment:
Q  164 tcacgagttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggac 253  Q
    ||||| |||||||| ||| |||||| ||||||||| |||| ||| |||||||| || |||||||||| || ||| ||||| ||| |||||    
T  20506 tcacgggttcaagtcctggaaacagcctcttgtgt-aaaacagagtaagactgcgtacaatacaccaaatagtgggaccccttcccggac 20418  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 22609799 - 22609895
Alignment:
Q  170 gttcaagttctgaaaacagtctcttgtgtaaaaatagaataagactgtgtgcaatacaccagatggtgagaccctttctcggactctacgtatgcgg 266  Q
    ||||||||  || |||||| |||||||||||||| ||  |||| ||| || |||||||||| |||||| ||||| ||| |||||  | |||||||||    
T  22609799 gttcaagtcttggaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccttgcgtatgcgg 22609895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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