View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12692_high_4 (Length: 335)

Name: NF12692_high_4
Description: NF12692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12692_high_4
NF12692_high_4
[»] chr6 (1 HSPs)
chr6 (1-313)||(24254536-24254848)
[»] chr7 (7 HSPs)
chr7 (1-309)||(19326095-19326394)
chr7 (1-198)||(19374530-19374727)
chr7 (1-198)||(19344685-19344882)
chr7 (240-285)||(19779275-19779320)
chr7 (67-127)||(12820092-12820152)
chr7 (153-193)||(18997860-18997900)
chr7 (243-291)||(19351400-19351448)
[»] chr5 (7 HSPs)
chr5 (243-307)||(29647343-29647407)
chr5 (67-127)||(29597734-29597794)
chr5 (235-307)||(29597881-29597953)
chr5 (158-199)||(29642139-29642180)
chr5 (158-199)||(29647456-29647497)
chr5 (235-291)||(29642041-29642097)
chr5 (65-101)||(29642213-29642249)
[»] chr2 (2 HSPs)
chr2 (239-291)||(18909160-18909212)
chr2 (258-291)||(18921106-18921139)
[»] chr4 (2 HSPs)
chr4 (60-114)||(53790391-53790445)
chr4 (228-273)||(53790220-53790265)
[»] chr1 (1 HSPs)
chr1 (61-129)||(4366665-4366733)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 24254536 - 24254848
Alignment:
Q  1 tcaacacagcaatagtcggttcaatatctggcacttcatcaataccccgaggggtctgaaattgcttgtatgtctcagtaccaagatcaagggagataat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24254536 tcaacacagcaatagtcggttcaatatctggcacttcatcaacaccccgaggggtctgaaattgcttgtatgtctcagtaccaagatcaagggagataat 24254635  T
Q  101 catgaattgctcaacggtaatatccttattataagaattataaatggccttatttcgaatggcaaaccaattaactgtgccactcaaatacactccttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  24254636 catgaattgctcaacggtaatatccttattataagaattataaatggccttatttcgaatggcaaaccaattaactgtgccactcaaatacactccttca 24254735  T
Q  201 ttgttactaaaggtaagaataatagcatggtcaaaaggaggaaaacttgaaatttttctccaaatattatcactcaaactgaaaactttcagtttactag 300  Q
    ||||||||||||||||||  ||| |||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||     
T  24254736 ttgttactaaaggtaagaggaatggcatggtcaaaaggaggaaaccttgaaatttttctccaaatattatccttcaaactgaaaactttcagtttactat 24254835  T
Q  301 aacacaagaacac 313  Q
    |||| | ||||||    
T  24254836 aacatatgaacac 24254848  T

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Target: chr7 (Bit Score: 181; Significance: 9e-98; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 19326095 - 19326394
Alignment:
Q  1 tcaacacagcaatagtcggttcaatatctggcacttcatcaataccccgaggggtctgaaattgcttgtatgtctcagtaccaagatcaagggagataat 100  Q
    |||||||||||||||||||| ||| || |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19326095 tcaacacagcaatagtcggtgcaacatatggcacttcatcaacaccacgaggggtctgaaattgcttgtatgtctcagtaccaagatcaagggagataat 19326194  T
Q  101 catgaattgctcaacggtaatatccttattataagaattataaatggccttatttcgaatggcaaaccaattaactgtgccactcaaatacactccttgg 200  Q
    ||| |||||||| ||||||||||||||         ||||||| | | |||| |||||| ||||||||| |||||||||||||||||||||||||||| |    
T  19326195 cataaattgctcgacggtaatatcctt---------attataactagacttacttcgaagggcaaaccagttaactgtgccactcaaatacactccttcg 19326285  T
Q  201 ttgttactaaaggtaagaataatagcatggtcaaaaggaggaaaacttgaaatttttctccaaatattatcactcaaactgaaaactttcagtttactag 300  Q
    || |||||||||  |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  | |||||    
T  19326286 ttcttactaaagccaagagtaacagcatggtcaaaaggaggaaagcttgaaatttttctccaaatattatcactcaaactgaaaactttcacctcactag 19326385  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 19374727 - 19374530
Alignment:
Q  1 tcaacacagcaatagtcggttcaatatctggcacttcatcaataccccgaggggtctgaaattgcttgtatgtctcagtaccaagatcaagggagataat 100  Q
    |||| |||||||||||| |||| | |||||||||||||||||  || | ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19374727 tcaatacagcaatagtcagttccacatctggcacttcatcaacgccactaggggtctgaaattgcttgtatgtctcggtaccaagatcaagggagataat 19374628  T
Q  101 catgaattgctcaacggtaatatccttattataagaattataaatggccttatttcgaatggcaaaccaattaactgtgccactcaaatacactcctt 198  Q
    ||  |||| | |||| ||||| ||||| | | || ||| || | ||  |||| |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  19374627 cacaaatttcccaacagtaatctccttctgacaataatcatgactgaacttacttcgaatggcaaaccagttaacagtgccgctcaaatacactcctt 19374530  T

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Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 19344685 - 19344882
Alignment:
Q  1 tcaacacagcaatagtcggttcaatatctggcacttcatcaataccccgaggggtctgaaattgcttgtatgtctcagtaccaagatcaagggagataat 100  Q
    |||| |||||||||||| |||||| |||||||||||||||||  || | | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19344685 tcaatacagcaatagtcagttcaaaatctggcacttcatcaacgccactaagggtctgaaattgcttgtatgtctcggtaccaagatcaagggagataat 19344784  T
Q  101 catgaattgctcaacggtaatatccttattataagaattataaatggccttatttcgaatggcaaaccaattaactgtgccactcaaatacactcctt 198  Q
    ||  |||| | |||| ||||||||||| | | || |||  | | ||  |||| || |||||||| |||| ||||| ||||| ||||||||||||||||    
T  19344785 cacaaatttcccaacagtaatatccttctgacaataatattgactgaacttactttgaatggcataccagttaacagtgccgctcaaatacactcctt 19344882  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 19779320 - 19779275
Alignment:
Q  240 ggaaaacttgaaatttttctccaaatattatcactcaaactgaaaa 285  Q
    |||||||||| ||| | |||||||||||||||||||||||||||||    
T  19779320 ggaaaacttggaatatctctccaaatattatcactcaaactgaaaa 19779275  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 12820092 - 12820152
Alignment:
Q  67 tgtatgtctcagtaccaagatcaagggagataatcatgaattgctcaacggtaatatcctt 127  Q
    ||||| |||| |||| ||||||||||||||||||||| | ||| ||||| |||| ||||||    
T  12820092 tgtatatctcggtactaagatcaagggagataatcataagttgttcaacagtaaaatcctt 12820152  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 18997860 - 18997900
Alignment:
Q  153 tttcgaatggcaaaccaattaactgtgccactcaaatacac 193  Q
    ||||||||||| ||||||||||| |||||||||| ||||||    
T  18997860 tttcgaatggccaaccaattaacagtgccactcacatacac 18997900  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 19351400 - 19351448
Alignment:
Q  243 aaacttgaaatttttctccaaatattatcactcaaactgaaaactttca 291  Q
    ||||||| ||| | |||||||| ||||||||||||||| ||||||||||    
T  19351400 aaacttggaatatctctccaaacattatcactcaaactaaaaactttca 19351448  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 29647407 - 29647343
Alignment:
Q  243 aaacttgaaatttttctccaaatattatcactcaaactgaaaactttcagtttactagaacacaa 307  Q
    ||||||| |||||||||||||||||||||||  |||| |||||||||||  | ||||||||||||    
T  29647407 aaacttgcaatttttctccaaatattatcaccgaaacggaaaactttcacctcactagaacacaa 29647343  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 29597734 - 29597794
Alignment:
Q  67 tgtatgtctcagtaccaagatcaagggagataatcatgaattgctcaacggtaatatcctt 127  Q
    |||||||||||||| |||||||||| ||||||||||  |||| |||||| |||| ||||||    
T  29597734 tgtatgtctcagtagcaagatcaagcgagataatcacaaatttctcaacagtaacatcctt 29597794  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 29597881 - 29597953
Alignment:
Q  235 aaggaggaaaacttgaaatttttctccaaatattatcactcaaactgaaaactttcagtttactagaacacaa 307  Q
    |||||| |||||||  |||||||||||||||||||||||  |||| |||||||||||  |  |||||||||||    
T  29597881 aaggagtaaaacttacaatttttctccaaatattatcaccgaaacggaaaactttcacctccctagaacacaa 29597953  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 29642180 - 29642139
Alignment:
Q  158 aatggcaaaccaattaactgtgccactcaaatacactccttg 199  Q
    ||||| || ||||||||| |||||||||||||||||||||||    
T  29642180 aatggaaatccaattaacagtgccactcaaatacactccttg 29642139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 29647497 - 29647456
Alignment:
Q  158 aatggcaaaccaattaactgtgccactcaaatacactccttg 199  Q
    ||||| || ||||||||| |||||||||||||||||||||||    
T  29647497 aatggaaatccaattaacagtgccactcaaatacactccttg 29647456  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 29642097 - 29642041
Alignment:
Q  235 aaggaggaaaacttgaaatttttctccaaatattatcactcaaactgaaaactttca 291  Q
    |||||| |||| ||| |||||||||||||||||||||||  |||  |||||||||||    
T  29642097 aaggagtaaaatttgcaatttttctccaaatattatcaccgaaatggaaaactttca 29642041  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 29642249 - 29642213
Alignment:
Q  65 cttgtatgtctcagtaccaagatcaagggagataatc 101  Q
    |||||||||||| |||||||||||||| |||||||||    
T  29642249 cttgtatgtctcggtaccaagatcaagcgagataatc 29642213  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 18909160 - 18909212
Alignment:
Q  239 aggaaaacttgaaatttttctccaaatattatcactcaaactgaaaactttca 291  Q
    ||||||||||| ||| | |||||||| |||||| |||||||||||||||||||    
T  18909160 aggaaaacttggaatatctctccaaacattatccctcaaactgaaaactttca 18909212  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 18921106 - 18921139
Alignment:
Q  258 ctccaaatattatcactcaaactgaaaactttca 291  Q
    ||||||| ||||||||||||||||||||||||||    
T  18921106 ctccaaacattatcactcaaactgaaaactttca 18921139  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 53790445 - 53790391
Alignment:
Q  60 aattgcttgtatgtctcagtaccaagatcaagggagataatcatgaattgctcaa 114  Q
    ||||| ||||||||||| ||||||||||||||  ||||||||||  |||||||||    
T  53790445 aattgtttgtatgtctccgtaccaagatcaagcaagataatcatatattgctcaa 53790391  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 53790265 - 53790220
Alignment:
Q  228 tggtcaaaaggaggaaaacttgaaatttttctccaaatattatcac 273  Q
    ||||||||| ||||||||||||||||||   |||||||||||||||    
T  53790265 tggtcaaaacgaggaaaacttgaaatttcagtccaaatattatcac 53790220  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 4366665 - 4366733
Alignment:
Q  61 attgcttgtatgtctcagtaccaagatcaagggagataatcatgaattgctcaacggtaatatccttat 129  Q
    |||| ||||||||||| ||||| |||||||| || | ||| |  ||||||||||||||||||| |||||    
T  4366665 attgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaatattcttat 4366733  T

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