View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12692_low_2 (Length: 465)
Name: NF12692_low_2
Description: NF12692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12692_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 6254888 - 6255065
Alignment:
| Q |
17 |
aatttcaagtgctttctatcaaattaatcttagtattttagtccaagtgaaatatgtaatggcattgctataagttctataatagttttaatatttctat |
116 |
Q |
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| T |
6254888 |
aatttcaagtgctttctatcaaattaatcttagtattttagtccaagtgaaatatgtaatgtcattgctataagttctataatagttttaatatttctat |
6254987 |
T |
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| Q |
117 |
gttagttttaaagttgtttgaacttttaatcaagcttatgtatcagacttggcaagtagtgtgaatgagatattttga |
194 |
Q |
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| T |
6254988 |
gttagttttaaagttttttgaacttttaatcaagcttatgtatcagacttggcaagtagtctgaatgagatattttga |
6255065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 367 - 454
Target Start/End: Original strand, 6255057 - 6255144
Alignment:
| Q |
367 |
atattttgattatgtttcatgaaatatccaccttgaagtataattattgtcgacttttttgcgttagtgcttcttcgttattgttcat |
454 |
Q |
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| T |
6255057 |
atattttgattatgtttcatgaaatatccaccttaaagtataattattgtcgacttttttgcgttagtgcttcttcgttattgttcat |
6255144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 10599362 - 10599188
Alignment:
| Q |
17 |
aatttcaagtgctttctatcaaattaatcttagtattttagtccaagtgaaatatgtaatggcattgctataagttctataatagttttaatatttctat |
116 |
Q |
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| T |
10599362 |
aatttcaagtgctttctatcaaattaattttagtattttagtccaagtgaaatatgtaatgtcattgctataagttctataatagttttaatatttttat |
10599263 |
T |
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| Q |
117 |
gttagttttaaagttgtttgaacttttaatcaagcttatgtatcagacttggcaagtagtgtgaatgagatatttt |
192 |
Q |
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| T |
10599262 |
gttagtttt-aagttttttgaacttttaatcaaacttatttatcagacttggcaagtagtgtgaatgagatttttt |
10599188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 370 - 454
Target Start/End: Complemental strand, 10599191 - 10599106
Alignment:
| Q |
370 |
ttttgattatgtttcatgaaatatccaccttgaagtataattattgtcga-cttttttgcgttagtgcttcttcgttattgttcat |
454 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
10599191 |
tttttattatgtttcatgaaatatccaccttaaagtataattattgtcgattttttttgagttagtgcttcttcgttattgttcat |
10599106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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