View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12692_low_6 (Length: 248)
Name: NF12692_low_6
Description: NF12692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12692_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 14478120 - 14477901
Alignment:
| Q |
18 |
catgcttaacattgaactcgattgtttaagctttagagttagaccactctgcctaatggtataagatggttattgcatttgtgtgttaattttcatgtat |
117 |
Q |
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| T |
14478120 |
catgcttaacattgaactcgattgtttaagctttagagttagaccactctgcctaatggtataagatggttattgcatttgtgtgttaattttcatgtat |
14478021 |
T |
|
| Q |
118 |
tgacacttcttaccattgaatcacaatataattcaattttaatttctgttctcaaatatcagccaaaatcctctaattttatttctctatttactactcc |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14478020 |
tgacgcttcttaccattgaatcacaatataattcaattttaatttctgttctcaaatatcagccaaaatcctctaattttatttctctatttactactcc |
14477921 |
T |
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| Q |
218 |
cccttttctaattagttcat |
237 |
Q |
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|||||||||||||||||||| |
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| T |
14477920 |
cccttttctaattagttcat |
14477901 |
T |
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