View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12693_high_1 (Length: 495)
Name: NF12693_high_1
Description: NF12693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12693_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 17291188 - 17291005
Alignment:
| Q |
25 |
ttgtaacagtacaatgtatgaaccactgtatttcgtaggcagcagatgcaagtgcacaatgatcagcttcactagaggatcggaacattgtg-ttttgtt |
123 |
Q |
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| T |
17291188 |
ttgtaacagtacaatgtacgaaccactgtatttcgtaggcagcagatgcaagtgcacaatgatcagcttcactagaggatcgggacattgtgtttttttt |
17291089 |
T |
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| Q |
124 |
tcttggtac-ctaagaaatgaaagaagatctaaggaagaaatagaatctagcaatggagtgtagagtgtcgatacgatcggcta |
206 |
Q |
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| T |
17291088 |
tcttagtacactaagaaatgaaagaagatctaaggaagaaacataatctaacaatggagcgtagagtgtcgatacaaccggcta |
17291005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 209 - 361
Target Start/End: Complemental strand, 17290445 - 17290293
Alignment:
| Q |
209 |
ctgtagtaaaagaagtgtaagattttcacacatttttgaatagcctgtttaaggcatgtaaggacttcaaaagcttccatagtttattaggttgtgtgat |
308 |
Q |
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| T |
17290445 |
ctgtaataagagaagtgtaagattttcacacattttcgaatagccgatttaaggcatttaaggacttcaaaagcttccatactttattaggttgtgtggt |
17290346 |
T |
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| Q |
309 |
agtcactctttgaggaatgatcatatatacatcttgtaaatttccatccattg |
361 |
Q |
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| T |
17290345 |
agtcactctttgagggatgatcatatatacatcttgtaaatttccatccattg |
17290293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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