View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12693_high_2 (Length: 415)
Name: NF12693_high_2
Description: NF12693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12693_high_2 |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: scaffold0135 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 227 - 412
Target Start/End: Original strand, 37100 - 37286
Alignment:
| Q |
227 |
attagtaaacttatcctttaattcnnnnnnn-agcttcttaagatgtccttgtttgttttataaattgagtattgattaggaaaaattgtaattttgatt |
325 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37100 |
attagtaaacttatcctttaattcttttttttagcttcttaagatgtccttgtttgttttataaattgagtattgattaggaaaaattgtaattttgatt |
37199 |
T |
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| Q |
326 |
tggattgaaattgatggtgttgcaacttgcaggttaagactacaattcctgagaaatattatgttaggcctaatattggagttctgt |
412 |
Q |
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| T |
37200 |
tggattgaaattgatggtgttgcaacttgcaggttaagactacaattcctgagaaatattgtgttaggcctaatattggagttctgt |
37286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 227 - 412
Target Start/End: Original strand, 9231234 - 9231420
Alignment:
| Q |
227 |
attagtaaacttatcctttaattcnnnnnnn-agcttcttaagatgtccttgtttgttttataaattgagtattgattaggaaaaattgtaattttgatt |
325 |
Q |
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| T |
9231234 |
attagtaaacttatcctttaattcttttttttagcttcttaagatgtccttgtttgttttataaattgagtattgattaggaaaaattgtaattttgatt |
9231333 |
T |
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| Q |
326 |
tggattgaaattgatggtgttgcaacttgcaggttaagactacaattcctgagaaatattatgttaggcctaatattggagttctgt |
412 |
Q |
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| T |
9231334 |
tggattgaaattgatggtgttgcaacttgcaggttaagactacaattcctgagaaatattgtgttaggcctaatattggagttctgt |
9231420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 276 - 408
Target Start/End: Complemental strand, 9169027 - 9168895
Alignment:
| Q |
276 |
tgtttgttttataaattgagtattgattaggaaaaattgtaattttgatttggattgaaattgatggtgttgcaacttgcaggttaagactacaattcct |
375 |
Q |
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| T |
9169027 |
tgtttgcttaataaattgagtgttatttaggaaaagctgtaattttgatttggattgaaattgatggtgttgcaacttgcaggttaaaactacaattcct |
9168928 |
T |
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| Q |
376 |
gagaaatattatgttaggcctaatattggagtt |
408 |
Q |
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| T |
9168927 |
gagaaatattgtgttaggcctaatattggagtt |
9168895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 412
Target Start/End: Original strand, 9256462 - 9256598
Alignment:
| Q |
276 |
tgtttgttttataaattgagtattgattaggaaaaattgtaattttgatttggattgaaattgatggtgttgcaacttgcaggttaagactacaattcct |
375 |
Q |
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| T |
9256462 |
tgtttgcttaataaattgagtgttatttaggaaaagttatgattatgagttggattgaaattgatggtgttgcaacttgcaggttaagactacaattcct |
9256561 |
T |
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| Q |
376 |
gagaaatattatgttaggcctaatattggagttctgt |
412 |
Q |
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| T |
9256562 |
gagaaatattgtgttaggcctaatattggagttctgt |
9256598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 315 - 412
Target Start/End: Original strand, 9267153 - 9267250
Alignment:
| Q |
315 |
taattttgatttggattgaaattgatggtgttgcaacttgcaggttaagactacaattcctgagaaatattatgttaggcctaatattggagttctgt |
412 |
Q |
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| T |
9267153 |
taattttgatttggattgaaattgatggtgttgcaacttgcaggttaagactacagttcctgagaaatattgtgttaggcctaatattggagttctgt |
9267250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 9155385 - 9155474
Alignment:
| Q |
318 |
ttttgatttggattgaaattgatggtgttgcaacttgcaggttaagactacaattcctgagaaatattatgttaggcctaatattggagt |
407 |
Q |
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| T |
9155385 |
ttttgatttgtattgaaattgatggtgttacaacttgcaggttaagactacaattcctgagaaatattgtgttaggcctaataatggagt |
9155474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 9310017 - 9309964
Alignment:
| Q |
355 |
caggttaagactacaattcctgagaaatattatgttaggcctaatattggagtt |
408 |
Q |
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| T |
9310017 |
caggttaagactacaaatccaaagaagtattgtgttaggcctaataatggagtt |
9309964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 1533920 - 1533849
Alignment:
| Q |
20 |
ggatggcgcggccagttcggcctgccagtcaaagggcatggccgcagctgtgagaagatatgtgagtggagt |
91 |
Q |
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| T |
1533920 |
ggatggcgtggccagttcggcctgccagtcaaagggcatggccacaactgtgagaagatatgtgagtggagt |
1533849 |
T |
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