View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12693_high_6 (Length: 247)
Name: NF12693_high_6
Description: NF12693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12693_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 22621008 - 22620922
Alignment:
| Q |
157 |
gtgtgaacctttcaaattaaaagaatttgaagcttgggagaatgttggagcacttttgctacattactccagctatggtcatagtcc |
243 |
Q |
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| T |
22621008 |
gtgtgaacctttctaattaaaagaatttgaagcttgggagaatgttggagcacttttgctacattattccagctatggtcatagtcc |
22620922 |
T |
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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 22621475 - 22621388
Alignment:
| Q |
6 |
gagaagaaacacatttaggaaccaaatttgggtttttccaatcttttc--tatgtgtaatagttgctgctattctgtcaaaggaagtc |
91 |
Q |
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| T |
22621475 |
gagaagaaacacattcaggaatcgaatttgggctttcccaatcttttctatatgtgtaatagttgctgcttctctgtcaaaggaagtc |
22621388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 31270955 - 31270912
Alignment:
| Q |
177 |
aagaatttgaagcttgggagaatgttggagcacttttgctacat |
220 |
Q |
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| T |
31270955 |
aagaatttgaaacttgggagaatgttggagcaattctgctacat |
31270912 |
T |
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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 15148292 - 15148375
Alignment:
| Q |
160 |
tgaacctttcaaattaaaagaatttgaagcttgggagaatgttggagcacttttgctacattactccagctatggtcatagtcc |
243 |
Q |
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| T |
15148292 |
tgaatctttctaattaaaagaatttgaaccttgggagaatgttggagcacttttgctacattacttcagctatggtcatagtcc |
15148375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 15147606 - 15147693
Alignment:
| Q |
6 |
gagaagaaacacatttaggaaccaaatttgggtttttccaatcttttc--tatgtgtaatagttgctgctattctgtcaaaggaagtc |
91 |
Q |
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| T |
15147606 |
gagaagaaacacattaaggaaccaaatttgggttttcccaatcttttctatatgtgtaatagttgctgcttctctggcgaaggaagtc |
15147693 |
T |
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