View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12693_low_6 (Length: 300)
Name: NF12693_low_6
Description: NF12693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12693_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 34259344 - 34259609
Alignment:
| Q |
21 |
aaagtgaaaccaaacaacacttcaatctacatatgttcgtatgtatgtatgaataaaatgtcataaaaagtgacaacttggtaatgttacttaaggataa |
120 |
Q |
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| T |
34259344 |
aaagtgaaaccaaacaacacttcaatctacatatgttcgtatgtatgtatgaataaaatgtcataaaaagtgacaacttggtaatgttacttaaggataa |
34259443 |
T |
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| Q |
121 |
tatagtatgttcagtcaatcagttgcacttaattatttgcagccttttattaggactcttacgtactttatgagtaaactacattgtgactgaactgaaa |
220 |
Q |
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| T |
34259444 |
tatagtatgttcagtcaatcagttgcacttaattatttgcagcctcttattaggactct----tactttatgagtaaactacattgtgactgaactgaaa |
34259539 |
T |
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| Q |
221 |
gtgaaatgtatatttatcagaagaagaagcaatgacaattagtacaccactgttggtgagattccctttg |
290 |
Q |
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| T |
34259540 |
gtgaaatgtatatttatcagaagaagaagcaatgacaattagtacaccacagttggtgagattccctttg |
34259609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 34249488 - 34249542
Alignment:
| Q |
235 |
tatcagaagaagaagcaatgacaattagtacaccactgttggtgagattcccttt |
289 |
Q |
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| T |
34249488 |
tatcagaagaagaagcaatggcaagtagtagatcacagttggtgagattcccttt |
34249542 |
T |
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