View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_high_16 (Length: 253)
Name: NF12694_high_16
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 45793508 - 45793266
Alignment:
| Q |
1 |
ccaacccattttttccaccaaaagattaattttaatannnnnnnattatttagttnnnnnnnn-ctgttatatgcttttctctgattgtaaattttgcgg |
99 |
Q |
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| T |
45793508 |
ccaacccatgttttccaccaaaagattaattttaatatttttttattatttagttaaaaaaaaactgttatatgcttttctctgattgtaaattttgcgg |
45793409 |
T |
|
| Q |
100 |
ttctctttttcgtggtatatagcacccctcgacatcgacttcatgtgtttaataaataaataaaatatgaatctttaatatgatgagaatgttgattgaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45793408 |
ttctctttttcgtggtatatagcacccctcgacatcgacttcatgtgtt---taaataaataaaatatgaatctttaatatgatgagaatgttgattgaa |
45793312 |
T |
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| Q |
200 |
ccttcaacat---ctatatgactacactatttaattcttcatctca |
242 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45793311 |
ccttcaacatctactatatgactacactatttaattcttcatctca |
45793266 |
T |
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