View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_high_17 (Length: 250)
Name: NF12694_high_17
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 22365251 - 22365026
Alignment:
| Q |
1 |
ttacttaaggaacaataaaaagcaccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365251 |
ttacttaaggaacaataaaaagcaccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtg |
22365152 |
T |
|
| Q |
101 |
gcttttacattcttacaatttttccttacgaactaagaacgagagctccacctttttggatatttctcaaagtatactatggtctatagtatcaaactat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365151 |
gcttttacattcttacaatttttccttacgaactaagaatgagagctccacctttttggatatttctcaaagtatactatggtctatagtatcaaactat |
22365052 |
T |
|
| Q |
201 |
tttcttgaccattgacattatcaaag |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
22365051 |
tttcttgaccattgacattatcaaag |
22365026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 2788522 - 2788417
Alignment:
| Q |
1 |
ttacttaaggaacaataaaaagcaccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtg |
100 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2788522 |
ttacttcaggaacaataaaaggcaccatatccataattccagttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttcttttaagtgtg |
2788423 |
T |
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| Q |
101 |
gctttt |
106 |
Q |
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|||||| |
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| T |
2788422 |
gctttt |
2788417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 2788415 - 2788356
Alignment:
| Q |
167 |
tcaaagtatactatggtctatagtatcaaactattttcttgaccattgacattatcaaag |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2788415 |
tcaaagtatactatggtctatagtatcaaactattttcttggccattgacattatcaaag |
2788356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 219
Target Start/End: Original strand, 9368764 - 9368793
Alignment:
| Q |
190 |
tatcaaactattttcttgaccattgacatt |
219 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
9368764 |
tatcaaactattttcttgaccattgacatt |
9368793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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