View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12694_high_2 (Length: 558)

Name: NF12694_high_2
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12694_high_2
NF12694_high_2
[»] chr8 (3 HSPs)
chr8 (11-540)||(5040880-5041409)
chr8 (183-224)||(14229606-14229647)
chr8 (180-224)||(29198600-29198644)
[»] chr2 (2 HSPs)
chr2 (487-540)||(43187194-43187247)
chr2 (187-219)||(36036318-36036350)
[»] chr3 (2 HSPs)
chr3 (183-225)||(13635640-13635682)
chr3 (183-224)||(14782796-14782837)
[»] chr5 (2 HSPs)
chr5 (183-224)||(28136281-28136322)
chr5 (183-227)||(12478341-12478385)
[»] chr1 (1 HSPs)
chr1 (183-221)||(4785045-4785083)
[»] chr6 (1 HSPs)
chr6 (184-225)||(18263563-18263604)


Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Complemental strand, 5041409 - 5040880
Alignment:
Q  11 cacagacaattctgtcgaaaatgataatgatggaatttcaaagctattttctgactgcaaaaacttatggaacttcagttatgtcagtaacacagcaact 110  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5041409 cacagacacttctgtcgaaaatgataatgatggaatttcaaagctattttctgactgcaaaaacttatggaacttcagttatgtcagtaacacagcaacc 5041310  T
Q  111 tcctcaggtgaaactgatagtaatgtttcaaacagtacaagctacgaagcactgacacaaacacggacgcaaacaccagacacgccttcgatcagaagtg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| ||||||||| |||||    
T  5041309 tcctcaggtgaaactgatagtaatgtttcaaacagtacaagctacgaagcactgacacaaacacagatgcgaacaccagacacgtcttcgatcaaaagtg 5041210  T
Q  211 tcagtgctacagagggtactggaaacaaaaacattcagtgtccactcaatgaatttgatgaaacaatctctcaaagttcctcagatcaatacatccatcc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5041209 tcagtgctacagagggtactggaaacaaaaacattcagtgtccactcaatgaatttgatgaaacaatctctcaaagttcctcagatcaatacatccatcc 5041110  T
Q  311 aagaaaagcaatacaatcaagtactattcataattcttcacctgttgaaggtggttttagacttatcactgataaaccaccaaaatgcaagaaaccaaga 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5041109 aagaaaagcaatacaatcaagtactattcataattcttcacctgttgaaggtggttttagacttatcactgataaaccaccaaaatgcaagaaaccaaga 5041010  T
Q  411 tgtgataagggaccttgttcaactaatattaattttcaacaaccaaattcatcatcaatgtgctgttcttcttcaattgaagaagctgatccagaagcaa 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5041009 tgtgataagggaccttgttcaactaatattaattttcaacaaccaaattcatcatcaatgtgctgttcttcttcaattgaagaagctgatccagaagcaa 5040910  T
Q  511 tagcacaaatgaaggaaatgatgtatagag 540  Q
    ||||||||||||||||||||||||||||||    
T  5040909 tagcacaaatgaaggaaatgatgtatagag 5040880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 14229606 - 14229647
Alignment:
Q  183 acaccagacacgccttcgatcagaagtgtcagtgctacagag 224  Q
    ||||| |||| |||||||||||||||||||||||||| ||||    
T  14229606 acaccggacatgccttcgatcagaagtgtcagtgctatagag 14229647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 29198644 - 29198600
Alignment:
Q  180 caaacaccagacacgccttcgatcagaagtgtcagtgctacagag 224  Q
    ||||||||||||||||||| ||||||| ||||| || ||||||||    
T  29198644 caaacaccagacacgccttagatcagaggtgtcggttctacagag 29198600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 487 - 540
Target Start/End: Complemental strand, 43187247 - 43187194
Alignment:
Q  487 ttgaagaagctgatccagaagcaatagcacaaatgaaggaaatgatgtatagag 540  Q
    |||||||  |||||||||| |||||||||||||||||||||||||| |||||||    
T  43187247 ttgaagagcctgatccagaggcaatagcacaaatgaaggaaatgatatatagag 43187194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 36036318 - 36036350
Alignment:
Q  187 cagacacgccttcgatcagaagtgtcagtgcta 219  Q
    |||||||||||||| ||||||||||||||||||    
T  36036318 cagacacgccttcggtcagaagtgtcagtgcta 36036350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 13635640 - 13635682
Alignment:
Q  183 acaccagacacgccttcgatcagaagtgtcagtgctacagagg 225  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  13635640 acaccagacacgccttctatcagaagtgtcagtgctactgagg 13635682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 14782837 - 14782796
Alignment:
Q  183 acaccagacacgccttcgatcagaagtgtcagtgctacagag 224  Q
    ||||||||||||| ||| |||||||||||| |||||||||||    
T  14782837 acaccagacacgctttccatcagaagtgtcggtgctacagag 14782796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 28136281 - 28136322
Alignment:
Q  183 acaccagacacgccttcgatcagaagtgtcagtgctacagag 224  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  28136281 acaccagacacgtcttcgatcagaagtgtcagtgctatagag 28136322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 12478341 - 12478385
Alignment:
Q  183 acaccagacacgccttcgatcagaagtgtcagtgctacagagggt 227  Q
    ||||||||||||||||| ||||||| |||| |||||||| |||||    
T  12478341 acaccagacacgccttccatcagaaatgtcggtgctacaaagggt 12478385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 4785045 - 4785083
Alignment:
Q  183 acaccagacacgccttcgatcagaagtgtcagtgctaca 221  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  4785045 acaccagacacgtcttcgatcagaagtgtcggtgctaca 4785083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 18263563 - 18263604
Alignment:
Q  184 caccagacacgccttcgatcagaagtgtcagtgctacagagg 225  Q
    |||| |||||| ||||||||||||||||| ||||||||||||    
T  18263563 cacctgacacgtcttcgatcagaagtgtcggtgctacagagg 18263604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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