View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_high_22 (Length: 240)
Name: NF12694_high_22
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36125970 - 36125744
Alignment:
| Q |
1 |
cgctcttctcgctcggcccttcatgttgactcacctctggggacttgtagcctaccatgaactgttgagcatgcttcaagtcagttacttccacaagtcc |
100 |
Q |
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| T |
36125970 |
cgctcttctcgctcggcccttcatgttgactcacctctggggacttgtagcctaccatgaactgttgagcatggttcaagtcagttacttccacaagtcc |
36125871 |
T |
|
| Q |
101 |
atactcagttaaaaaaggctcaaatgaatggtctaacacaacattcgatgattttagatgtccatgtggtaacttttcgtccggaaattctctgtaaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36125870 |
atactcagttaaaaaaggctcaaatgaatggtctaacacaacattcgatgattttagatgtccatgtggtaacttttcgtccggaaattctctgtaaagg |
36125771 |
T |
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| Q |
201 |
taagctaaacctctagctactcctttg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36125770 |
taagctaaacctctagctactcctttg |
36125744 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 226
Target Start/End: Complemental strand, 1255807 - 1255674
Alignment:
| Q |
93 |
acaagtccatactcagttaaaaaaggctcaaatgaatggtctaacacaacattcgatgattttagatgtccatgtggtaacttttcgtccggaaattctc |
192 |
Q |
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|||||||||||||||||||||| |||||||| ||| || || || ||||| || ||||||||||| |||||||||| |||| | || |||||| |
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| T |
1255807 |
acaagtccatactcagttaaaagtggctcaaaggaaatgtttagcattacattggaggattttagatgaccatgtggtaggttttgtttagggaattctt |
1255708 |
T |
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| Q |
193 |
tgtaaaggtaagctaaacctctagctactccttt |
226 |
Q |
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|||| |||| ||||| ||||| ||||||||||| |
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| T |
1255707 |
tgtagaggtgtgctaagcctcttgctactccttt |
1255674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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