View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_high_25 (Length: 212)
Name: NF12694_high_25
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_high_25 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 376050 - 375839
Alignment:
| Q |
1 |
tggcaattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaacctgaattccaccatcctccacaactgctgttttatactcga |
100 |
Q |
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| T |
376050 |
tggcaattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaaccttaattccaccatcctccacaactgctgttttatactcaa |
375951 |
T |
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| Q |
101 |
tattcatttcatcaagattcttcattataagtttcatgtctgagcattgaaatgaaatatgattttctttcgtgttgatttctcctcttttcactggaac |
200 |
Q |
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| T |
375950 |
tattcatttcatcaaggttcttcattataagtttcatgtctgagcattgaaatgaaatatgattttctttcgtgttgatttctcctcttttcactggaac |
375851 |
T |
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| Q |
201 |
tttatctgactc |
212 |
Q |
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| T |
375850 |
tttatctgactc |
375839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 44544811 - 44544876
Alignment:
| Q |
4 |
caattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaacctgaattcca |
69 |
Q |
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| T |
44544811 |
caattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattcca |
44544876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 44555453 - 44555518
Alignment:
| Q |
4 |
caattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaacctgaattcca |
69 |
Q |
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| T |
44555453 |
caattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattcca |
44555518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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