View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12694_high_5 (Length: 411)

Name: NF12694_high_5
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12694_high_5
NF12694_high_5
[»] chr1 (8 HSPs)
chr1 (20-400)||(11544751-11545146)
chr1 (209-394)||(35898736-35898921)
chr1 (315-398)||(44611440-44611523)
chr1 (58-137)||(44611707-44611786)
chr1 (353-397)||(44144599-44144643)
chr1 (319-397)||(44786066-44786144)
chr1 (77-137)||(35898999-35899059)
chr1 (101-137)||(44144801-44144837)
[»] chr3 (3 HSPs)
chr3 (226-398)||(26727221-26727393)
chr3 (353-397)||(8341623-8341667)
chr3 (25-133)||(26727483-26727587)
[»] scaffold0017 (2 HSPs)
scaffold0017 (199-400)||(173546-173747)
scaffold0017 (199-396)||(168541-168738)
[»] chr5 (1 HSPs)
chr5 (224-400)||(29508243-29508419)
[»] chr2 (6 HSPs)
chr2 (29-137)||(29228615-29228719)
chr2 (29-137)||(29341914-29342018)
chr2 (199-271)||(29228787-29228859)
chr2 (199-271)||(29342086-29342158)
chr2 (315-397)||(29228895-29228977)
chr2 (315-397)||(29342194-29342276)
[»] scaffold0061 (1 HSPs)
scaffold0061 (199-396)||(30054-30251)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 400
Target Start/End: Original strand, 11544751 - 11545146
Alignment:
Q  20 tgtctcaactgtgagagattgccaagttgagaaggaatgaatcttcccatgataataactatttgagagattaaggcatcataacttggtgaaggagcca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  11544751 tgtctcaactgtgagagattgccaagttgagaaggaatgaatcttcgcatgataataactatttgagagattaaggtatcataacttggttaaggagcca 11544850  T
Q  120 ataaattttgggatttgagtgaaaataatcatactact---------------tagatgctgtaactcagttattgaaggatttattgtagtcctttcac 204  Q
    ||||||||||||||||||||||||||||||||||||||               |||||| ||||||||||||||||||||||||||||||||||||||||    
T  11544851 ataaattttgggatttgagtgaaaataatcatactactgaggtctaaatattttagatgttgtaactcagttattgaaggatttattgtagtcctttcac 11544950  T
Q  205 cacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatctgggtt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||  ||||||||||||||||||    
T  11544951 cacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgttgcaacgaactcctttccatttacaacaatctgggtt 11545050  T
Q  305 tcgattgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttcat 400  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11545051 ttgattgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctgtgcacttcat 11545146  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 394
Target Start/End: Complemental strand, 35898921 - 35898736
Alignment:
Q  209 caaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatctgggtttcga 308  Q
    |||||| |||||||  |||||||||||||| |||||||||| |||||| ||||||||| ||||   ||||||||||  ||| || |||||||  ||| ||    
T  35898921 caaatagcgtgtttttgaaccatgcaaatcaagactttgaatataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcatttgga 35898822  T
Q  309 ttgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgca 394  Q
     | |  |||||||| ||||||||  | ||||  |||| ||||  |||||||||   |||||| |||||||||||||||||||||||    
T  35898821 ctatcattccatgtagacaacataccgtactcgtcttgaaggccttgtttgaaaccgaggagagcatgtctctccctctctttgca 35898736  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 398
Target Start/End: Complemental strand, 44611523 - 44611440
Alignment:
Q  315 ttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttc 398  Q
    |||||||| ||||||||  |||||| ||||| ||||| |||||| || |||||||||||| |||||||||||||||||||||||    
T  44611523 ttccatgtggacaacataccatactcatcttgaaggtcttgtttaaacgtgaggagtgcacgtctctccctctctttgcacttc 44611440  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 44611786 - 44611707
Alignment:
Q  58 gaatcttcccatgataataactatttgagagattaaggcatcataacttggtgaaggagccaataaattttgggatttga 137  Q
    |||||||||||| | ||  |||||||||||||| |||| ||| ||| |||  ||||||||||||||||||||||||||||    
T  44611786 gaatcttcccatcaaaaccactatttgagagatcaaggtatcttaagttgcagaaggagccaataaattttgggatttga 44611707  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 44144643 - 44144599
Alignment:
Q  353 ttgtttgaatgtgaggagtgcatgtctctccctctctttgcactt 397  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  44144643 ttgtttgaaagtgaggagtgcgtgtctctccctctctttgcactt 44144599  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 397
Target Start/End: Original strand, 44786066 - 44786144
Alignment:
Q  319 atgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcactt 397  Q
    |||| ||||||||| |||| | ||||| || |  ||||||||||||||||||||| |||||||| ||| ||||||||||    
T  44786066 atgtggacaacatgccataatcatcttgaatgccttgtttgaatgtgaggagtgcttgtctctcactcactttgcactt 44786144  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 35899059 - 35898999
Alignment:
Q  77 actatttgagagattaaggcatcataacttggtgaaggagccaataaattttgggatttga 137  Q
    |||||||||||||| || | |||  || ||| |||||||||||||||||||||||||||||    
T  35899059 actatttgagagatcaatgtatcgcaagttgctgaaggagccaataaattttgggatttga 35898999  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 44144837 - 44144801
Alignment:
Q  101 taacttggtgaaggagccaataaattttgggatttga 137  Q
    ||||||| |||||||||||||||||||||||||||||    
T  44144837 taacttgctgaaggagccaataaattttgggatttga 44144801  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 398
Target Start/End: Complemental strand, 26727393 - 26727221
Alignment:
Q  226 aaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatctgggtttcgattgttgttccatgtcga 325  Q
    ||||||||||||| || ||||||||||||||||||| |||| ||||  | |||||  ||  ||| || |||||||  ||| |||  |  |||||||| ||    
T  26727393 aaccatgcaaatcaagtctttgaacataacctgtttcgttgttgcataagactcccatccatttgcagcaatctgcattttgatcatccttccatgtgga 26727294  T
Q  326 caacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttc 398  Q
    ||| ||| |||||| ||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  26727293 caaaatgccatactcatcttgaaggccttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttc 26727221  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 8341667 - 8341623
Alignment:
Q  353 ttgtttgaatgtgaggagtgcatgtctctccctctctttgcactt 397  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  8341667 ttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactt 8341623  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 26727587 - 26727483
Alignment:
Q  25 caactgtgagagattgccaagttgagaaggaatgaatcttcccatgataataactatttgagagattaaggcatcataacttggtgaaggagccaataaa 124  Q
    |||||||||||| || |||||||||||||||||    |||| ||| | || |   |||||||||||||||| ||| ||| ||| ||||||||||||||||    
T  26727587 caactgtgagagttttccaagttgagaaggaat----cttctcattaaaaaaggcatttgagagattaaggtatcgtaaattgatgaaggagccaataaa 26727492  T
Q  125 ttttgggat 133  Q
     ||||||||    
T  26727491 atttgggat 26727483  T

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Target: scaffold0017 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 199 - 400
Target Start/End: Complemental strand, 173747 - 173546
Alignment:
Q  199 tttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatc 298  Q
    ||||||||| ||||| |||||||||||| ||||||| ||| ||||||||||||||||| |||| | || ||||   |||||| |||  ||| || |||||    
T  173747 tttcaccactcaaatgacgtgtttccgagccatgcagatcaagactttgaacataaccagtttcgatgttgcattgaactcccttccatttgcagcaatc 173648  T
Q  299 tgggtttcgattgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttc 398  Q
    |   ||| ||  |   |||||||| ||||||||| |||| | ||||| ||||  ||||||||| |||||||||||  ||||||| |||||||||||||||    
T  173647 ttcattttgaccgcccttccatgtggacaacatgccataatcatcttgaaggccttgtttgaacgtgaggagtgcgcgtctctctctctctttgcacttc 173548  T
Q  399 at 400  Q
    ||    
T  173547 at 173546  T

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Target: scaffold0017; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 396
Target Start/End: Complemental strand, 168738 - 168541
Alignment:
Q  199 tttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatc 298  Q
    ||||||||| |||| ||||||||||||||||||||| ||| ||  ||| ||||||||| ||||| ||| ||||   |||||| |||  ||| || |||||    
T  168738 tttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccggtttgattgttgcattgaactcccttccatttgcagcaatc 168639  T
Q  299 tgggtttcgattgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcact 396  Q
    ||  ||| |||  |  |||||||| ||||||||  |||| | ||||| ||||  |||||| || |||| ||||| |||||||||||| ||||||||||    
T  168638 tgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtttcaaagtgacgagtgaatgtctctccctttctttgcact 168541  T

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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 224 - 400
Target Start/End: Original strand, 29508243 - 29508419
Alignment:
Q  224 cgaaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatctgggtttcgattgttgttccatgtc 323  Q
    ||||||||||| ||| || |||||||||||||||||||| ||| |||| | |||||| |||  ||| || ||||||   ||| | | ||  ||||||||     
T  29508243 cgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtg 29508342  T
Q  324 gacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcacttcat 400  Q
    ||||||||| |||||| ||||| ||||  || ||||||| |||||||||||| ||||||| ||||||  ||||||||    
T  29508343 gacaacatgccatactcatcttgaaggccttctttgaatttgaggagtgcatttctctccttctcttcacacttcat 29508419  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 29228615 - 29228719
Alignment:
Q  29 tgtgagagattgccaagttgagaaggaatgaatcttcccatgataataactatttgagagattaaggcatcataacttggtgaaggagccaataaatttt 128  Q
    ||||||||||| |||||||||||||||||    |||||||| ||||| ||   |||||||||| ||| ||  ||||||| ||||||||||||||||||||    
T  29228615 tgtgagagatttccaagttgagaaggaat----cttcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaatttt 29228710  T
Q  129 gggatttga 137  Q
    |||||||||    
T  29228711 gggatttga 29228719  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 29341914 - 29342018
Alignment:
Q  29 tgtgagagattgccaagttgagaaggaatgaatcttcccatgataataactatttgagagattaaggcatcataacttggtgaaggagccaataaatttt 128  Q
    ||||||||||| |||||||||||||||||    |||||||| ||||| ||   |||||||||| ||| ||  ||||||| ||||||||||||||||||||    
T  29341914 tgtgagagatttccaagttgagaaggaat----cttcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaatttt 29342009  T
Q  129 gggatttga 137  Q
    |||||||||    
T  29342010 gggatttga 29342018  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 29228787 - 29228859
Alignment:
Q  199 tttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgca 271  Q
    ||||||||| ||||||   ||||||||||| ||||| ||| ||||||||||||||||| ||||||||| ||||    
T  29228787 tttcaccactcaaatagtttgtttccgaacgatgcagatcaagactttgaacataaccagtttggttgttgca 29228859  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 29342086 - 29342158
Alignment:
Q  199 tttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgca 271  Q
    ||||||||| ||||||   ||||||||||| ||||| ||| ||||||||||||||||| ||||||||| ||||    
T  29342086 tttcaccactcaaatagtttgtttccgaacgatgcagatcaagactttgaacataaccagtttggttgttgca 29342158  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 29228895 - 29228977
Alignment:
Q  315 ttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcactt 397  Q
    ||||||||  |||||||| ||| || ||||| ||||  |||||||||  |||| ||||| |||||||||||||||||||||||    
T  29228895 ttccatgtgaacaacatgacattctcatctttaaggccttgtttgaacctgagcagtgcttgtctctccctctctttgcactt 29228977  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 29342194 - 29342276
Alignment:
Q  315 ttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcactt 397  Q
    ||||||||  |||||||| ||| || ||||| ||||  |||||||||  |||| ||||| |||||||||||||||||||||||    
T  29342194 ttccatgtgaacaacatgacattctcatctttaaggccttgtttgaacctgagcagtgcttgtctctccctctctttgcactt 29342276  T

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Target: scaffold0061 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 396
Target Start/End: Original strand, 30054 - 30251
Alignment:
Q  199 tttcaccacccaaataacgtgtttccgaaccatgcaaatcgagactttgaacataacctgtttggttgctgcaacaaactcctttctttttacaacaatc 298  Q
    ||||||||| |||| ||||||||||||||||||||| ||| ||  ||| ||||||||| ||||| ||| ||||   |||||| |||  ||| || |||||    
T  30054 tttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccggtttgattgttgcattgaactcccttccatttgcagcaatc 30153  T
Q  299 tgggtttcgattgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcatgtctctccctctctttgcact 396  Q
    ||  ||| |||  |  |||||||| ||||||||  |||| | ||||| ||||  |||||| || |||| ||||| |||||||||||| ||||||||||    
T  30154 tgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtttcaaagtgacgagtgaatgtctctccctttctttgcact 30251  T

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