View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_high_7 (Length: 393)
Name: NF12694_high_7
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 7811103 - 7810774
Alignment:
| Q |
19 |
gctccgatgacgccttgacaacacctttctcaatcaaactcaaatattccttgtagtgaagcaagatctccagtaacttttccaaatgatcatagaagcc |
118 |
Q |
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| T |
7811103 |
gctccgatgacgccttgacaacacctttctcaatcaaactcaaatattccttgtagtgaagcaagatctccagtaacttttccaaatgatcatagaagcc |
7811004 |
T |
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| Q |
119 |
atcaaataatggaactgcaagttgcataaagttgcatgattcctccattgtttcatgaaaaagattgagaaagaacaatctttgagattgcatgtgtaac |
218 |
Q |
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| T |
7811003 |
atcaaataatggaactgcaagttgcat----------gattcctccattgtttcatgaaaaagattgagaaagaacaatctttgagattgcatgtgtaac |
7810914 |
T |
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| Q |
219 |
aaacttgcaaactgaaaacttatataagttattttggttctctaggttgaatcctcaaccagactctaataccaattgttaaaatcaaacttgatttcac |
318 |
Q |
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| T |
7810913 |
aaacttgcaaactgaaaacttatataagttattttggttctctaggttgaatcctcaaccagactctaataccaattgttaaaatcaaacttgatttcac |
7810814 |
T |
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| Q |
319 |
tcatcttattaaccatataatgcctttaaatattatccac |
358 |
Q |
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| T |
7810813 |
tcatcttattaaccatataatgcctttaaatattgtccac |
7810774 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 393
Target Start/End: Complemental strand, 33817378 - 33817335
Alignment:
| Q |
350 |
attatccaccggtttagaaatgctcctgctcaacacttcttctg |
393 |
Q |
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| T |
33817378 |
attatccaccagtttagaaatgcccgtgctcaacacttcttctg |
33817335 |
T |
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