View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_low_1 (Length: 595)
Name: NF12694_low_1
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 212 - 579
Target Start/End: Complemental strand, 38792430 - 38792066
Alignment:
| Q |
212 |
ctttcattagtttgtagttgaaatcttaacattttctattctccacataattcagctgcttaccatacattgtaaagttttaattaagcattacttcttg |
311 |
Q |
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| T |
38792430 |
ctttcatcagtctgtagttgacatcttaacattttctattctccacataattcagctggttacaagacattt--aagttttaattaagcattacttcttg |
38792333 |
T |
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| Q |
312 |
aaaatatgaattgtgtcaatgaagaatatggcaagtgctgtaatatgcaatactttgnnnnnnnntattactattgccttgaacttgtgtttatcccttt |
411 |
Q |
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| T |
38792332 |
aaaatgttaattgtgtcaatgaagaatatggcaagtgctgtaatatgcaatactttg-aaaaaaatattactactgccttaaacctgtgtttatcccttt |
38792234 |
T |
|
| Q |
412 |
ttgaggtttaaaattgaactgttttaagagttatttttggtttcagaattttgaggacnnnnnnnnggggtatttcgtcagtcgtgctcatgatattatg |
511 |
Q |
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| T |
38792233 |
ttgaggtttaaaattgaactgttttaagagttatttttggtttcagaatttcgaggactttgttgtggagcatttcgtcagccgtgctcatgatattatg |
38792134 |
T |
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| Q |
512 |
gttgcatgcaataatgcatacatggaaaatgatgttgatgagtttgacggaagctgcgcagaaagaat |
579 |
Q |
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| T |
38792133 |
gttgcatgcaataatgcatacatggaaaatgatgttgatgagtttgacgaatgctgtgcaaaaagaat |
38792066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 38793055 - 38792875
Alignment:
| Q |
19 |
catagaaaagtgaagcaagtatgtacaagttcc-aggtaaaacgcgaagaccggtttccttcgcctctgcgtaac--atcactgatattacgtcaaaacc |
115 |
Q |
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| T |
38793055 |
catagaaaagtgaagcaagtatgtacaagttcccatgtaaaacgtgaagactgatttcctttgccgctccgtagcttattactgatattatgtcaaaacc |
38792956 |
T |
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| Q |
116 |
acgccgaagggcagactatgacagaactgaatttgaattcagtgcagtcggtgactgtacagtcatgtaatcagacaatcc |
196 |
Q |
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| T |
38792955 |
atgccgaagggcagactgtgatagaactgaatttgaattcagtgcagtaggtgactgtataatcatgtagtcagacaatcc |
38792875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 29780422 - 29780355
Alignment:
| Q |
9 |
agcacagatacatagaaaagtgaagcaagtatgta-caagttccaggtaaaacgcgaagaccggtttc |
75 |
Q |
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| T |
29780422 |
agcacatatacatagacaagtgaagcaagtccctaacaagttccaagtaaaacgtgaagaccggtttc |
29780355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 468
Target Start/End: Complemental strand, 5838392 - 5838358
Alignment:
| Q |
434 |
tttaagagttatttttggtttcagaattttgagga |
468 |
Q |
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| T |
5838392 |
tttaagtgttatttttggtttcagaattttgagga |
5838358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 52474429 - 52474466
Alignment:
| Q |
330 |
atgaagaatatggcaagtgctgtaatatgcaatacttt |
367 |
Q |
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| T |
52474429 |
atgaagattatggaaagtgctgtaatatgcaatacttt |
52474466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 469
Target Start/End: Complemental strand, 4519926 - 4519890
Alignment:
| Q |
433 |
ttttaagagttatttttggtttcagaattttgaggac |
469 |
Q |
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| T |
4519926 |
ttttaagtgttatttttggttttagaattttgaggac |
4519890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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