View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_low_10 (Length: 348)
Name: NF12694_low_10
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 13001530 - 13001701
Alignment:
| Q |
62 |
aataactttaaagatagaaaaatacccctgagtagatgtatttttgggcagctcctagaactggaagttcctttaatgtctttgctctttgcattgttat |
161 |
Q |
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|||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
13001530 |
aataacgttaaagttagaaaaataccc--gagtagatgtatttttgggcagctcctagaactggaagttcctttaatgtcttttctctttgcatcgttat |
13001627 |
T |
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| Q |
162 |
cacttgaagagatcccttctctataacctagtcaaggatcaaatcaatt---aagtggagaaaaagctatagat |
232 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||| |
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| T |
13001628 |
cactacaagagatcccttctttataacctagtcaaggatcaaataaattaagaagtggagaaaaagccatagat |
13001701 |
T |
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Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 13001729 - 13001834
Alignment:
| Q |
227 |
atagatgttattcaaatatcaattaaaagcatttttaagaaaaataaaataaaagaccttgcattttcaacttcttagagttaggttcctctcttgctcg |
326 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13001729 |
atagatgttattcaaatatcaattaaaagaatatttaagaaaaataaaataaaagaccttgcattttcaacttcttagagttaggttcctctcttgctcg |
13001828 |
T |
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| Q |
327 |
agtaat |
332 |
Q |
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|||||| |
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| T |
13001829 |
agtaat |
13001834 |
T |
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